CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBN24827
(
Caenorhabditis brenneri
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBN24827
T301836_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.912
0.571
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.886
0.586
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.847
0.614
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.846
0.629
nhr-204
M00704_2.00
Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN
PBM
Narasimhan et al.(2015)
pTH10028
0.785
0.471
CBG26996_CONSTRUCT
M01300_2.00
PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN
PBM
Lambert et al.(2019)
pTH11460
0.767
0.486
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN24827
Nuclear receptor
89
158
HHCSVCGDRPTGYHYDVLSCNGCKTFFRRTIINRRQFACTKGGDCQFTKDFRCACRACRFEKCVRVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis brenneri
TFs
239 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.994
CJA08896
Caenorhabditis japonica
CJA08896
I
0.994
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.994
CRE00149
Caenorhabditis remanei
CRE00149
I
0.993
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.991
L893_g3565
Steinernema glaseri
L893_g3565
I
0.991
NECAME_08394
Necator americanus
NECAME_08394
I
0.989
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.988
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.987
scaffold43-EXSNAP2012.41
Pristionchus exspectatus
scaffold43-EXSNAP2012.41
I
0.987
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.986
HPLM_0000769401
Haemonchus placei
HPLM_0000769401
I
0.986
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.986
PPA21777
Pristionchus pacificus
PPA21777
I
0.984
L889_g1891
Steinernema feltiae
L889_g1891
I
0.984
L893_g28857
Steinernema glaseri
L893_g28857
I
0.984
L889_g1557
Steinernema feltiae
L889_g1557
I
0.983
L898_g9866
Steinernema monticolum
L898_g9866
I
0.983
ASU_03657
Ascaris suum
ASU_03657
I
0.980
PEQ_0000722401
Parascaris equorum
PEQ_0000722401
I
0.980
CBG10857
Caenorhabditis briggsae
CBG10857
I
0.975
CRE00606
Caenorhabditis remanei
CRE00606
I
0.975
LOAG_16377
Loa loa
LOAG_16377
I
0.975
nhr-173
Caenorhabditis elegans
WBGene00016975
I
0.975
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.975
HPBE_0000704501
Heligmosomoides bakeri
HPBE_0000704501
I
0.975
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.974
L596_g23863
Steinernema carpocapsae
L596_g23863
I
0.974
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.971
ANCCEY_01254
Ancylostoma ceylanicum
ANCCEY_01254
I
0.970
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.969
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.969
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.969
CJA00680
Caenorhabditis japonica
CJA00680
I
0.966
PPA24481
Pristionchus pacificus
PPA24481
I
0.956
scaffold552-EXSNAP2012.17
Pristionchus exspectatus
scaffold552-EXSNAP2012.17
I
0.956
PPA29597
Pristionchus pacificus
PPA29597
I
0.948
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.946
scaffold552-EXSNAP2012.18
Pristionchus exspectatus
scaffold552-EXSNAP2012.18
I
0.946
TCLT_0000256201
Thelazia callipaeda
TCLT_0000256201
I
0.944
NECAME_01944
Necator americanus
NECAME_01944
I
0.943
scaffold426-EXSNAP2012.35
Pristionchus exspectatus
scaffold426-EXSNAP2012.35
I
0.942
HPBE_0001246601
Heligmosomoides bakeri
HPBE_0001246601
I
0.941
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.940
HCOI01525900
Haemonchus contortus
HCOI01525900
I
0.938
ANCCAN_09880
Ancylostoma caninum
ANCCAN_09880
I
0.937
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.935
L889_g17247
Steinernema feltiae
L889_g17247
I
0.935
L893_g13285
Steinernema glaseri
L893_g13285
I
0.935
L898_g26357
Steinernema monticolum
L898_g26357
I
0.935
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.935
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.928
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.928
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.928
scaffold251-EXSNAP2012.44
Pristionchus exspectatus
scaffold251-EXSNAP2012.44
I
0.927
scaffold826-EXSNAP2012.10
Pristionchus exspectatus
scaffold826-EXSNAP2012.10
I
0.927
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.926
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.925
scaffold598-EXSNAP2012.5
Pristionchus exspectatus
scaffold598-EXSNAP2012.5
I
0.925
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.925
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.925
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.925
PPA06637
Pristionchus pacificus
PPA06637
I
0.924
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.919
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.919
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.919
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.919
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.916
Bm4980
Brugia malayi
Bm4980
I
0.914
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.914
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.914
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.914
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.914
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.914
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.913
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.913
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.912
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.912
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.912
CRE08259
Caenorhabditis remanei
CRE08259
I
0.912
LOAG_08615
Loa loa
LOAG_08615
I
0.912
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.912
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.912
ASU_03870
Ascaris suum
ASU_03870
I
0.912
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.912
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.912
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.907
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.907
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.907
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.907
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
I
0.906
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.905
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.902
PPA10975
Pristionchus pacificus
PPA10975
N
0.896
Hba_12763
Heterorhabditis bacteriophora
Hba_12763
I
0.896
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.895
nhr-136
Caenorhabditis elegans
WBGene00003726
I
0.894
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.893
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.890
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.889
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.886
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.886
CJA13458
Caenorhabditis japonica
CJA13458
I
0.886
CRE03310
Caenorhabditis remanei
CRE03310
I
0.886
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.886
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.886
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.886
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.886
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.885
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.885
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.883
L889_g29879
Steinernema feltiae
L889_g29879
I
0.883
L893_g3010
Steinernema glaseri
L893_g3010
I
0.883
L898_g2764
Steinernema monticolum
L898_g2764
I
0.883
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.882
L889_g7780
Steinernema feltiae
L889_g7780
I
0.882
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.882
L898_g22454
Steinernema monticolum
L898_g22454
I
0.882
Bm5319
Brugia malayi
Bm5319
I
0.881
LOAG_00300
Loa loa
LOAG_00300
I
0.881
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.881
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.881
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.881
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.881
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.881
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.881
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.881
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.881
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.881
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.879
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.879
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.879
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.879
PPA24468
Pristionchus pacificus
PPA24468
I
0.878
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.878
L893_g25227
Steinernema glaseri
L893_g25227
I
0.878
scaffold265-EXSNAP2012.2
Pristionchus exspectatus
scaffold265-EXSNAP2012.2
I
0.878
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.877
ASU_12501
Ascaris suum
ASU_12501
I
0.877
NECAME_00872
Necator americanus
NECAME_00872
I
0.877
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.872
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.872
Hba_12764
Heterorhabditis bacteriophora
Hba_12764
N
0.870
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.867
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.867
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
I
0.866
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
I
0.866
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.862
MhA1_Contig320.frz3.gene45
Meloidogyne hapla
MhA1_Contig320.frz3.gene45
I
0.861
CRE25378
Caenorhabditis remanei
CRE25378
I
0.860
SMUV_0001072301
Syphacia muris
SMUV_0001072301
I
0.859
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.858
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.857
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.857
CBN29725
Caenorhabditis brenneri
CBN29725
I
0.851
CRE27053
Caenorhabditis remanei
CRE27053
I
0.851
CBG09380
Caenorhabditis briggsae
CBG09380
I
0.849
nhr-154
Caenorhabditis elegans
WBGene00007547
D
0.847
CBG23380
Caenorhabditis briggsae
CBG23380
D
0.846
CBN28497
Caenorhabditis brenneri
CBN28497
I
0.846
CRE27050
Caenorhabditis remanei
CRE27050
I
0.846
scaffold92-EXSNAP2012.31
Pristionchus exspectatus
scaffold92-EXSNAP2012.31
N
0.846
RSKR_0001171300
Rhabditophanes kr3021
RSKR_0001171300
I
0.844
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.836
CBG23381
Caenorhabditis briggsae
CBG23381
I
0.832
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.829
ASU_10584
Ascaris suum
ASU_10584
I
0.829
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.829
L889_g22901
Steinernema feltiae
L889_g22901
I
0.829
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.829
L893_g15276
Steinernema glaseri
L893_g15276
I
0.829
L898_g8573
Steinernema monticolum
L898_g8573
I
0.829
nhr-153
Caenorhabditis elegans
WBGene00007546
I
0.825
ANCCEY_01235
Ancylostoma ceylanicum
ANCCEY_01235
N
0.825
ALUE_0001920701
Ascaris lumbricoides
ALUE_0001920701
N
0.821
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.821
CBN28791
Caenorhabditis brenneri
CBN28791
I
0.819
nhr-141
Caenorhabditis elegans
WBGene00017787
I
0.816
CRE27052
Caenorhabditis remanei
CRE27052
I
0.813
TCNE_0001076801
Toxocara canis
TCNE_0001076801
N
0.810
CRE26981
Caenorhabditis remanei
CRE26981
I
0.807
TCLT_0000612301
Thelazia callipaeda
TCLT_0000612301
I
0.803
TELCIR_12561
Teladorsagia circumcincta
TELCIR_12561
N
0.800
ACOC_0000869501
Angiostrongylus costaricensis
ACOC_0000869501
I
0.797
HCOI00673400
Haemonchus contortus
HCOI00673400
I
0.797
HCOI01687000
Haemonchus contortus
HCOI01687000
I
0.797
HPBE_0001154501
Heligmosomoides bakeri
HPBE_0001154501
I
0.797
DME_0000747901
Dracunculus medinensis
DME_0000747901
I
0.796
NBR_0001576001
Nippostrongylus brasiliensis
NBR_0001576001
I
0.794
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.792
CRE30787
Caenorhabditis remanei
CRE30787
I
0.790
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.790
ASU_13587
Ascaris suum
ASU_13587
I
0.790
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.789
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.789
CJA41479
Caenorhabditis japonica
CJA41479
I
0.788
SSTP_0001081300
Strongyloides stercoralis
SSTP_0001081300
I
0.787
nhr-204
Caenorhabditis elegans
WBGene00019816
D
0.785
PTRK_0000194200
Parastrongyloides trichosuri
PTRK_0000194200
I
0.784
SSTP_0000408200
Strongyloides stercoralis
SSTP_0000408200
I
0.783
SVE_1749000
Strongyloides venezuelensis
SVE_1749000
I
0.783
scaffold204-EXSNAP2012.8
Pristionchus exspectatus
scaffold204-EXSNAP2012.8
N
0.780
SPAL_0000231300
Strongyloides papillosus
SPAL_0000231300
I
0.780
PPA27013
Pristionchus pacificus
PPA27013
N
0.778
CBN19664
Caenorhabditis brenneri
CBN19664
N
0.775
ANCCAN_20955
Ancylostoma caninum
ANCCAN_20955
N
0.775
SVE_0268000
Strongyloides venezuelensis
SVE_0268000
I
0.772
CBN23409
Caenorhabditis brenneri
CBN23409
I
0.768
CBN28056
Caenorhabditis brenneri
CBN28056
I
0.768
BXY_1375200
Bursaphelenchus xylophilus
BXY_1375200
I
0.768
SPAL_0000038800
Strongyloides papillosus
SPAL_0000038800
I
0.768
CBG26996
Caenorhabditis briggsae
CBG26996
I
0.767
CBG26996_CONSTRUCT
PBM CONSTRUCTS
CBG26996_CONSTRUCT
D
0.767
CBG23318
Caenorhabditis briggsae
CBG23318
I
0.763
CJA14829
Caenorhabditis japonica
CJA14829
I
0.763
nhr-68
Caenorhabditis elegans
WBGene00003658
I
0.763
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.761
CRE26982
Caenorhabditis remanei
CRE26982
I
0.761
nLs.2.1.2.g04051
Litomosoides sigmodontis
nLs.2.1.2.g04051
I
0.761
DICVIV_03784
Dictyocaulus viviparus
DICVIV_03784
I
0.757
scaffold178-EXSNAP2012.20
Pristionchus exspectatus
scaffold178-EXSNAP2012.20
N
0.757
ASU_02757
Ascaris suum
ASU_02757
N
0.755
ASU_02770
Ascaris suum
ASU_02770
I
0.754
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.754
L596_g23123
Steinernema carpocapsae
L596_g23123
I
0.754
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.754
L889_g11570
Steinernema feltiae
L889_g11570
I
0.753
L893_g21283
Steinernema glaseri
L893_g21283
I
0.753
L898_g23058
Steinernema monticolum
L898_g23058
I
0.753
L892_g4134
Steinernema scapterisci
L892_g4134
I
0.751
RSKR_0001067400
Rhabditophanes kr3021
RSKR_0001067400
I
0.750
CBN30215
Caenorhabditis brenneri
CBN30215
I
0.748
LOAG_08636
Loa loa
LOAG_08636
I
0.745
WBGene00240560
Onchocerca volvulus
WBGene00240560
I
0.745
EEL_0000204901
Elaeophora elaphi
EEL_0000204901
I
0.745
nAv.1.0.1.g09196
Acanthocheilonema viteae
nAv.1.0.1.g09196
I
0.745
nDi.2.2.2.g09348
Dirofilaria immitis
nDi.2.2.2.g09348
I
0.745
nOo.2.0.1.g03859
Onchocerca ochengi
nOo.2.0.1.g03859
I
0.745
RSKR_0001175400
Rhabditophanes kr3021
RSKR_0001175400
I
0.745