CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HCOI00673400
(
Haemonchus contortus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
HCOI00673400
T308783_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.942
0.657
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.784
0.529
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCOI00673400.t1
Nuclear receptor
9
78
TLCVVCEDIATGNHYSVPSCNGCKTFFRRAVVNNRMFTCMGSGDCPVNKGVRCACRHCRLKKCLLVGMDK
Links
Other
Nuclear receptor
family TFs
Other
Haemonchus contortus
TFs
208 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACOC_0000869501
Angiostrongylus costaricensis
ACOC_0000869501
I
0.993
HCOI01687000
Haemonchus contortus
HCOI01687000
I
0.993
HPBE_0001154501
Heligmosomoides bakeri
HPBE_0001154501
I
0.993
NBR_0001576001
Nippostrongylus brasiliensis
NBR_0001576001
I
0.993
DICVIV_03784
Dictyocaulus viviparus
DICVIV_03784
I
0.991
ASU_10584
Ascaris suum
ASU_10584
I
0.989
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.989
L889_g22901
Steinernema feltiae
L889_g22901
I
0.989
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.989
L893_g15276
Steinernema glaseri
L893_g15276
I
0.989
L898_g8573
Steinernema monticolum
L898_g8573
I
0.989
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.988
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.988
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.987
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.986
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.984
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.984
CRE30787
Caenorhabditis remanei
CRE30787
I
0.984
CBG09380
Caenorhabditis briggsae
CBG09380
I
0.977
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
I
0.976
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
I
0.976
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.974
MhA1_Contig320.frz3.gene45
Meloidogyne hapla
MhA1_Contig320.frz3.gene45
I
0.971
PTRK_0000194200
Parastrongyloides trichosuri
PTRK_0000194200
I
0.960
SSTP_0000408200
Strongyloides stercoralis
SSTP_0000408200
I
0.959
SVE_1749000
Strongyloides venezuelensis
SVE_1749000
I
0.959
SPAL_0000231300
Strongyloides papillosus
SPAL_0000231300
I
0.957
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.949
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.946
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.945
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.944
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.944
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.944
ASU_12501
Ascaris suum
ASU_12501
I
0.944
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.944
L893_g25227
Steinernema glaseri
L893_g25227
I
0.944
NECAME_00872
Necator americanus
NECAME_00872
I
0.944
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.944
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.944
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.943
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.943
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.943
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.943
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.943
L889_g7780
Steinernema feltiae
L889_g7780
I
0.943
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.943
L898_g22454
Steinernema monticolum
L898_g22454
I
0.943
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.943
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.942
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.942
CJA13458
Caenorhabditis japonica
CJA13458
I
0.942
CRE03310
Caenorhabditis remanei
CRE03310
I
0.942
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.942
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.942
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.942
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.942
Bm5319
Brugia malayi
Bm5319
I
0.939
LOAG_00300
Loa loa
LOAG_00300
I
0.939
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.939
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.939
L889_g29879
Steinernema feltiae
L889_g29879
I
0.939
L893_g3010
Steinernema glaseri
L893_g3010
I
0.939
L898_g2764
Steinernema monticolum
L898_g2764
I
0.939
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.939
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.939
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.939
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.939
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.938
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.938
CRE25378
Caenorhabditis remanei
CRE25378
I
0.938
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.935
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.934
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.934
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.934
SSTP_0001081300
Strongyloides stercoralis
SSTP_0001081300
I
0.920
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.917
L596_g702
Steinernema carpocapsae
L596_g702
I
0.915
L892_g5067
Steinernema scapterisci
L892_g5067
I
0.915
scaffold584-EXSNAP2012.2
Pristionchus exspectatus
scaffold584-EXSNAP2012.2
I
0.914
scaffold726-EXSNAP2012.5
Pristionchus exspectatus
scaffold726-EXSNAP2012.5
I
0.914
BXY_0988800
Bursaphelenchus xylophilus
BXY_0988800
I
0.912
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.912
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.910
CBG00093
Caenorhabditis briggsae
CBG00093
I
0.904
CJA06153
Caenorhabditis japonica
CJA06153
I
0.904
CRE24074
Caenorhabditis remanei
CRE24074
I
0.904
nhr-17
Caenorhabditis elegans
WBGene00003616
I
0.904
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.904
CBG02077
Caenorhabditis briggsae
CBG02077
I
0.902
CRE07549
Caenorhabditis remanei
CRE07549
I
0.902
DICVIV_12420
Dictyocaulus viviparus
DICVIV_12420
I
0.902
CBN07240
Caenorhabditis brenneri
CBN07240
I
0.901
CBN21115
Caenorhabditis brenneri
CBN21115
I
0.901
ACOC_0000048701
Angiostrongylus costaricensis
ACOC_0000048701
I
0.901
ANCCAN_24419
Ancylostoma caninum
ANCCAN_24419
I
0.901
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.901
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.901
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.901
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.901
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.901
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.901
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.901
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.901
TELCIR_00491
Teladorsagia circumcincta
TELCIR_00491
I
0.901
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.900
WUBG_08038
Wuchereria bancrofti
WUBG_08038
I
0.894
Bm5520
Brugia malayi
Bm5520
I
0.894
LOAG_03407
Loa loa
LOAG_03407
I
0.894
WBGene00240723
Onchocerca volvulus
WBGene00240723
I
0.894
BTMF_0001127801
Brugia timori
BTMF_0001127801
I
0.894
DME_0001010101
Dracunculus medinensis
DME_0001010101
I
0.894
EEL_0000987201
Elaeophora elaphi
EEL_0000987201
I
0.894
nAv.1.0.1.g02923
Acanthocheilonema viteae
nAv.1.0.1.g02923
I
0.894
nOo.2.0.1.g03355
Onchocerca ochengi
nOo.2.0.1.g03355
I
0.894
SMUV_0000795201
Syphacia muris
SMUV_0000795201
I
0.894
L893_g15045
Steinernema glaseri
L893_g15045
I
0.887
PPA24468
Pristionchus pacificus
PPA24468
I
0.884
scaffold265-EXSNAP2012.2
Pristionchus exspectatus
scaffold265-EXSNAP2012.2
I
0.884
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.883
RSKR_0001171300
Rhabditophanes kr3021
RSKR_0001171300
I
0.883
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.882
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.882
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.882
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.882
nhr-40
Caenorhabditis elegans
WBGene00003630
I
0.881
NECAME_06702
Necator americanus
NECAME_06702
I
0.879
PTRK_0001163100
Parastrongyloides trichosuri
PTRK_0001163100
I
0.869
SPAL_0001084400
Strongyloides papillosus
SPAL_0001084400
I
0.869
SPAL_0001084500
Strongyloides papillosus
SPAL_0001084500
I
0.869
SSTP_0001035300
Strongyloides stercoralis
SSTP_0001035300
I
0.869
SVE_0956400
Strongyloides venezuelensis
SVE_0956400
I
0.869
PPA20196
Pristionchus pacificus
PPA20196
I
0.864
scaffold290-EXSNAP2012.30
Pristionchus exspectatus
scaffold290-EXSNAP2012.30
I
0.864
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.863
L889_g8914
Steinernema feltiae
L889_g8914
I
0.856
ASU_02770
Ascaris suum
ASU_02770
I
0.855
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.855
L893_g22683
Steinernema glaseri
L893_g22683
I
0.855
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.855
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.853
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.853
LOAG_16377
Loa loa
LOAG_16377
I
0.849
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.849
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
I
0.847
ACOC_0000744201
Angiostrongylus costaricensis
ACOC_0000744201
I
0.844
ANCCAN_19046
Ancylostoma caninum
ANCCAN_19046
I
0.844
ANCDUO_17367
Ancylostoma duodenale
ANCDUO_17367
I
0.844
DICVIV_13545
Dictyocaulus viviparus
DICVIV_13545
I
0.844
HCOI00052900
Haemonchus contortus
HCOI00052900
I
0.844
NECAME_01070
Necator americanus
NECAME_01070
I
0.844
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.843
L889_g1891
Steinernema feltiae
L889_g1891
I
0.838
PPA16374
Pristionchus pacificus
PPA16374
I
0.834
ANCCEY_01254
Ancylostoma ceylanicum
ANCCEY_01254
I
0.831
SPAL_0000038800
Strongyloides papillosus
SPAL_0000038800
I
0.826
SVE_0268000
Strongyloides venezuelensis
SVE_0268000
I
0.822
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.814
L898_g9866
Steinernema monticolum
L898_g9866
I
0.814
L889_g1557
Steinernema feltiae
L889_g1557
I
0.812
NECAME_08394
Necator americanus
NECAME_08394
I
0.812
L893_g28857
Steinernema glaseri
L893_g28857
I
0.805
Bm4980
Brugia malayi
Bm4980
I
0.804
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.804
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.803
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.801
RSKR_0000625800
Rhabditophanes kr3021
RSKR_0000625800
I
0.800
HPLM_0000769401
Haemonchus placei
HPLM_0000769401
I
0.799
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.797
ASIM_0001238601
Anisakis simplex
ASIM_0001238601
N
0.797
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.796
scaffold43-EXSNAP2012.41
Pristionchus exspectatus
scaffold43-EXSNAP2012.41
I
0.793
L893_g3565
Steinernema glaseri
L893_g3565
I
0.792
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.792
NBR_0000088601
Nippostrongylus brasiliensis
NBR_0000088601
N
0.789
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.788
ASU_03657
Ascaris suum
ASU_03657
I
0.788
PEQ_0000722401
Parascaris equorum
PEQ_0000722401
I
0.788
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.787
CJA08896
Caenorhabditis japonica
CJA08896
I
0.787
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.787
CRE00149
Caenorhabditis remanei
CRE00149
I
0.786
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.786
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.786
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.784
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.784
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.784
CRE08259
Caenorhabditis remanei
CRE08259
I
0.784
LOAG_08615
Loa loa
LOAG_08615
I
0.784
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.784
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.784
ASU_03870
Ascaris suum
ASU_03870
I
0.784
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.784
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.784
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.784
L893_g13285
Steinernema glaseri
L893_g13285
I
0.780
PPA21777
Pristionchus pacificus
PPA21777
I
0.779
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.779
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.776
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.776
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.775
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.775
L898_g30390
Steinernema monticolum
L898_g30390
I
0.773
CRE26981
Caenorhabditis remanei
CRE26981
I
0.770
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.764
PPA24481
Pristionchus pacificus
PPA24481
I
0.754
scaffold552-EXSNAP2012.17
Pristionchus exspectatus
scaffold552-EXSNAP2012.17
I
0.754
TCLT_0000256201
Thelazia callipaeda
TCLT_0000256201
I
0.751
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.750