CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold43-EXSNAP2012.41
(
Pristionchus exspectatus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
scaffold43-EXSNAP2012.41
T310261_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.950
0.586
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.898
0.600
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.869
0.643
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.866
0.643
nhr-204
M00704_2.00
Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN
PBM
Narasimhan et al.(2015)
pTH10028
0.844
0.486
CBG26996_CONSTRUCT
M01300_2.00
PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN
PBM
Lambert et al.(2019)
pTH11460
0.831
0.486
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold43-EXSNAP2012.41
Nuclear receptor
31
100
FKCVVCGDKPTGYHYDVLSCNGCKTFYRRTIISGRSFSCTKGGKCDFDRDFRCACRACRFQKCVTVGMNA
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus exspectatus
TFs
257 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NECAME_08394
Necator americanus
NECAME_08394
I
0.992
PPA21777
Pristionchus pacificus
PPA21777
I
0.991
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.991
HPLM_0000769401
Haemonchus placei
HPLM_0000769401
I
0.991
L889_g1557
Steinernema feltiae
L889_g1557
I
0.991
L893_g28857
Steinernema glaseri
L893_g28857
I
0.990
L898_g9866
Steinernema monticolum
L898_g9866
I
0.990
CRE00149
Caenorhabditis remanei
CRE00149
I
0.989
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.988
CJA08896
Caenorhabditis japonica
CJA08896
I
0.988
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.988
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.987
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.987
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.987
L893_g3565
Steinernema glaseri
L893_g3565
I
0.987
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.984
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.981
ASU_03657
Ascaris suum
ASU_03657
I
0.979
PEQ_0000722401
Parascaris equorum
PEQ_0000722401
I
0.979
HPBE_0000704501
Heligmosomoides bakeri
HPBE_0000704501
I
0.977
L889_g1891
Steinernema feltiae
L889_g1891
I
0.977
CJA00680
Caenorhabditis japonica
CJA00680
I
0.975
LOAG_16377
Loa loa
LOAG_16377
I
0.975
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.975
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.974
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.971
ANCCEY_01254
Ancylostoma ceylanicum
ANCCEY_01254
I
0.971
CBG10857
Caenorhabditis briggsae
CBG10857
I
0.966
CRE00606
Caenorhabditis remanei
CRE00606
I
0.966
nhr-173
Caenorhabditis elegans
WBGene00016975
I
0.966
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.964
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.964
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.964
L596_g23863
Steinernema carpocapsae
L596_g23863
I
0.958
TCLT_0000256201
Thelazia callipaeda
TCLT_0000256201
I
0.953
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.951
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.950
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.950
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.950
CRE08259
Caenorhabditis remanei
CRE08259
I
0.950
LOAG_08615
Loa loa
LOAG_08615
I
0.950
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.950
ASU_03870
Ascaris suum
ASU_03870
I
0.950
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.950
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.950
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.950
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.950
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.950
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.950
PPA29597
Pristionchus pacificus
PPA29597
I
0.949
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.949
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.949
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.949
NECAME_01944
Necator americanus
NECAME_01944
I
0.948
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.948
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.948
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.948
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.947
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.946
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.946
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.946
HPBE_0001246601
Heligmosomoides bakeri
HPBE_0001246601
I
0.946
PPA24481
Pristionchus pacificus
PPA24481
I
0.945
scaffold552-EXSNAP2012.17
Pristionchus exspectatus
scaffold552-EXSNAP2012.17
I
0.945
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.944
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.944
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.944
Bm4980
Brugia malayi
Bm4980
I
0.943
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.943
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.943
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.943
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.943
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.942
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.942
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.942
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.942
ANCCAN_09880
Ancylostoma caninum
ANCCAN_09880
I
0.940
scaffold552-EXSNAP2012.18
Pristionchus exspectatus
scaffold552-EXSNAP2012.18
I
0.940
scaffold251-EXSNAP2012.44
Pristionchus exspectatus
scaffold251-EXSNAP2012.44
I
0.939
scaffold826-EXSNAP2012.10
Pristionchus exspectatus
scaffold826-EXSNAP2012.10
I
0.939
HCOI01525900
Haemonchus contortus
HCOI01525900
I
0.938
PPA06637
Pristionchus pacificus
PPA06637
I
0.937
scaffold426-EXSNAP2012.35
Pristionchus exspectatus
scaffold426-EXSNAP2012.35
I
0.937
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
I
0.936
scaffold598-EXSNAP2012.5
Pristionchus exspectatus
scaffold598-EXSNAP2012.5
I
0.936
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.933
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.932
L889_g17247
Steinernema feltiae
L889_g17247
I
0.932
L893_g13285
Steinernema glaseri
L893_g13285
I
0.932
L898_g26357
Steinernema monticolum
L898_g26357
I
0.932
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.929
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.926
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.916
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.913
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.906
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.905
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.903
PPA10975
Pristionchus pacificus
PPA10975
N
0.901
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.901
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.901
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.899
L889_g29879
Steinernema feltiae
L889_g29879
I
0.899
L893_g3010
Steinernema glaseri
L893_g3010
I
0.899
L898_g2764
Steinernema monticolum
L898_g2764
I
0.899
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.898
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.898
CJA13458
Caenorhabditis japonica
CJA13458
I
0.898
CRE03310
Caenorhabditis remanei
CRE03310
I
0.898
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.898
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.898
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.898
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.898
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.897
Bm5319
Brugia malayi
Bm5319
I
0.894
LOAG_00300
Loa loa
LOAG_00300
I
0.894
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.894
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.894
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.894
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.894
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.894
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.894
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.893
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.893
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.893
Hba_12763
Heterorhabditis bacteriophora
Hba_12763
I
0.892
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.892
L893_g25227
Steinernema glaseri
L893_g25227
I
0.892
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.891
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.891
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.891
ASU_12501
Ascaris suum
ASU_12501
I
0.891
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.891
NECAME_00872
Necator americanus
NECAME_00872
I
0.891
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
I
0.890
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
I
0.890
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.890
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.890
Hba_12764
Heterorhabditis bacteriophora
Hba_12764
N
0.889
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.888
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.887
nhr-136
Caenorhabditis elegans
WBGene00003726
I
0.887
MhA1_Contig320.frz3.gene45
Meloidogyne hapla
MhA1_Contig320.frz3.gene45
I
0.886
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.885
CRE25378
Caenorhabditis remanei
CRE25378
I
0.880
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.877
L889_g7780
Steinernema feltiae
L889_g7780
I
0.877
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.877
L898_g22454
Steinernema monticolum
L898_g22454
I
0.877
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.877
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.874
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.874
SMUV_0001072301
Syphacia muris
SMUV_0001072301
I
0.873
CBG09380
Caenorhabditis briggsae
CBG09380
I
0.871
ANCCEY_01235
Ancylostoma ceylanicum
ANCCEY_01235
N
0.870
nhr-154
Caenorhabditis elegans
WBGene00007547
D
0.869
CBG23380
Caenorhabditis briggsae
CBG23380
D
0.866
CBN28497
Caenorhabditis brenneri
CBN28497
I
0.866
CRE27050
Caenorhabditis remanei
CRE27050
I
0.866
PPA24468
Pristionchus pacificus
PPA24468
I
0.862
scaffold265-EXSNAP2012.2
Pristionchus exspectatus
scaffold265-EXSNAP2012.2
I
0.862
scaffold92-EXSNAP2012.31
Pristionchus exspectatus
scaffold92-EXSNAP2012.31
N
0.854
TELCIR_12561
Teladorsagia circumcincta
TELCIR_12561
N
0.847
ANCCAN_20955
Ancylostoma caninum
ANCCAN_20955
N
0.845
nhr-204
Caenorhabditis elegans
WBGene00019816
D
0.844
ASU_10584
Ascaris suum
ASU_10584
I
0.839
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.839
L889_g22901
Steinernema feltiae
L889_g22901
I
0.839
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.839
L893_g15276
Steinernema glaseri
L893_g15276
I
0.839
L898_g8573
Steinernema monticolum
L898_g8573
I
0.839
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.839
DME_0000747901
Dracunculus medinensis
DME_0000747901
I
0.834
nhr-141
Caenorhabditis elegans
WBGene00017787
I
0.833
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.833
CBG26996
Caenorhabditis briggsae
CBG26996
I
0.831
CBG26996_CONSTRUCT
PBM CONSTRUCTS
CBG26996_CONSTRUCT
D
0.831
CBN23409
Caenorhabditis brenneri
CBN23409
I
0.830
CBN28056
Caenorhabditis brenneri
CBN28056
I
0.830
TCLT_0000612301
Thelazia callipaeda
TCLT_0000612301
I
0.829
CBN29725
Caenorhabditis brenneri
CBN29725
I
0.828
CRE27053
Caenorhabditis remanei
CRE27053
I
0.828
ASU_13587
Ascaris suum
ASU_13587
I
0.828
SVE_0268000
Strongyloides venezuelensis
SVE_0268000
I
0.826
RSKR_0001171300
Rhabditophanes kr3021
RSKR_0001171300
I
0.824
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.822
CRE26981
Caenorhabditis remanei
CRE26981
I
0.818
CRE30787
Caenorhabditis remanei
CRE30787
I
0.817
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.816
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.816
SPAL_0000038800
Strongyloides papillosus
SPAL_0000038800
I
0.815
ACOC_0000869501
Angiostrongylus costaricensis
ACOC_0000869501
I
0.810
HPBE_0001154501
Heligmosomoides bakeri
HPBE_0001154501
I
0.810
CBG23381
Caenorhabditis briggsae
CBG23381
I
0.806
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.802
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.801
NBR_0001576001
Nippostrongylus brasiliensis
NBR_0001576001
I
0.799
nhr-153
Caenorhabditis elegans
WBGene00007546
I
0.798
BXY_1375200
Bursaphelenchus xylophilus
BXY_1375200
I
0.798
PTRK_0001163100
Parastrongyloides trichosuri
PTRK_0001163100
I
0.798
SPAL_0001084400
Strongyloides papillosus
SPAL_0001084400
I
0.798
SPAL_0001084500
Strongyloides papillosus
SPAL_0001084500
I
0.798
SSTP_0001035300
Strongyloides stercoralis
SSTP_0001035300
I
0.798
SVE_0956400
Strongyloides venezuelensis
SVE_0956400
I
0.798
PTRK_0000194200
Parastrongyloides trichosuri
PTRK_0000194200
I
0.796
TCNE_0001076801
Toxocara canis
TCNE_0001076801
N
0.796
CJA41479
Caenorhabditis japonica
CJA41479
I
0.795
CJA14829
Caenorhabditis japonica
CJA14829
I
0.793
HCOI00673400
Haemonchus contortus
HCOI00673400
I
0.793
HCOI01687000
Haemonchus contortus
HCOI01687000
I
0.793
CBN28791
Caenorhabditis brenneri
CBN28791
I
0.792
WBGene00240560
Onchocerca volvulus
WBGene00240560
I
0.789
nLs.2.1.2.g04051
Litomosoides sigmodontis
nLs.2.1.2.g04051
I
0.789
nOo.2.0.1.g03859
Onchocerca ochengi
nOo.2.0.1.g03859
I
0.789
ASU_02770
Ascaris suum
ASU_02770
I
0.788
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.788
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.788
LOAG_08636
Loa loa
LOAG_08636
I
0.786
EEL_0000204901
Elaeophora elaphi
EEL_0000204901
I
0.786
nAv.1.0.1.g09196
Acanthocheilonema viteae
nAv.1.0.1.g09196
I
0.786
nDi.2.2.2.g09348
Dirofilaria immitis
nDi.2.2.2.g09348
I
0.786
CRE27052
Caenorhabditis remanei
CRE27052
I
0.785
SSTP_0001081300
Strongyloides stercoralis
SSTP_0001081300
I
0.784
SPAL_0000231300
Strongyloides papillosus
SPAL_0000231300
I
0.783
SVE_1749000
Strongyloides venezuelensis
SVE_1749000
I
0.783
SSTP_0000408200
Strongyloides stercoralis
SSTP_0000408200
I
0.782
scaffold178-EXSNAP2012.20
Pristionchus exspectatus
scaffold178-EXSNAP2012.20
N
0.781
scaffold204-EXSNAP2012.8
Pristionchus exspectatus
scaffold204-EXSNAP2012.8
N
0.781
PPA27013
Pristionchus pacificus
PPA27013
N
0.778
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.777
MhA1_Contig691.frz3.gene13
Meloidogyne hapla
MhA1_Contig691.frz3.gene13
I
0.777
Minc11307
Meloidogyne incognita
Minc11307
I
0.773
L596_g23123
Steinernema carpocapsae
L596_g23123
I
0.773
DICVIV_03784
Dictyocaulus viviparus
DICVIV_03784
I
0.772
Minc13747
Meloidogyne incognita
Minc13747
I
0.771
Minc17538
Meloidogyne incognita
Minc17538
I
0.771
BXY_0988800
Bursaphelenchus xylophilus
BXY_0988800
I
0.771
L596_g14199
Steinernema carpocapsae
L596_g14199
I
0.771
L892_g2422
Steinernema scapterisci
L892_g2422
I
0.771
MhA1_Contig817.frz3.gene1
Meloidogyne hapla
MhA1_Contig817.frz3.gene1
I
0.771
CBG23318
Caenorhabditis briggsae
CBG23318
I
0.770
CRE26982
Caenorhabditis remanei
CRE26982
I
0.770
nhr-68
Caenorhabditis elegans
WBGene00003658
I
0.770
ASU_02757
Ascaris suum
ASU_02757
N
0.770
L889_g11570
Steinernema feltiae
L889_g11570
I
0.766
L893_g21283
Steinernema glaseri
L893_g21283
I
0.766
L898_g23058
Steinernema monticolum
L898_g23058
I
0.766
GPLIN_000284100
Globodera pallida
GPLIN_000284100
I
0.765
L892_g4134
Steinernema scapterisci
L892_g4134
I
0.763
CJA01292
Caenorhabditis japonica
CJA01292
I
0.758
ALUE_0001217501
Ascaris lumbricoides
ALUE_0001217501
N
0.756
CBN30215
Caenorhabditis brenneri
CBN30215
I
0.755
CJA37776
Caenorhabditis japonica
CJA37776
I
0.751
PPA22443
Pristionchus pacificus
PPA22443
I
0.749
scaffold107-EXSNAP2012.33
Pristionchus exspectatus
scaffold107-EXSNAP2012.33
I
0.749
PPA16374
Pristionchus pacificus
PPA16374
I
0.747
PPA20196
Pristionchus pacificus
PPA20196
I
0.747
scaffold290-EXSNAP2012.30
Pristionchus exspectatus
scaffold290-EXSNAP2012.30
I
0.747