CBN28056 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN28056 T301846_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG26996_CONSTRUCT
M01300_2.00 		PBM CONSTRUCTS
NNNNTGRWMN
NKWYCANNNN		 PBM
Lambert et al.(2019)
pTH11460 		0.986 0.871
nhr-204
M00704_2.00 		Caenorhabditis elegans
NDNTGRTMHN
NDKAYCANHN		 PBM
Narasimhan et al.(2015)
pTH10028 		0.973 0.771
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN28056 Nuclear receptor 44 116

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBN23409 Caenorhabditis brenneri CBN23409 I 0.992
CBG26996 Caenorhabditis briggsae CBG26996 I 0.986
CBG26996_CONSTRUCT PBM CONSTRUCTS CBG26996_CONSTRUCT D 0.986
nhr-204 Caenorhabditis elegans WBGene00019816 D 0.973
CJA14829 Caenorhabditis japonica CJA14829 I 0.967
nhr-141 Caenorhabditis elegans WBGene00017787 I 0.885
L893_g28857 Steinernema glaseri L893_g28857 I 0.842
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I 0.830
L889_g1557 Steinernema feltiae L889_g1557 I 0.828
L898_g9866 Steinernema monticolum L898_g9866 I 0.828
PPA21777 Pristionchus pacificus PPA21777 I 0.818
NECAME_08394 Necator americanus NECAME_08394 I 0.812
PPA29597 Pristionchus pacificus PPA29597 I 0.809
HCOI01292200 Haemonchus contortus HCOI01292200 I 0.801
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I 0.799
L892_g4169 Steinernema scapterisci L892_g4169 I 0.795
L889_g1891 Steinernema feltiae L889_g1891 I 0.792
CJA00680 Caenorhabditis japonica CJA00680 I 0.788
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I 0.780
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I 0.780
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I 0.774
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I 0.774
CBN24827 Caenorhabditis brenneri CBN24827 I 0.768
CRE00149 Caenorhabditis remanei CRE00149 I 0.768
CBG10855 Caenorhabditis briggsae CBG10855 I 0.766
CJA08896 Caenorhabditis japonica CJA08896 I 0.766
nhr-120 Caenorhabditis elegans WBGene00003710 I 0.766
L596_g27472 Steinernema carpocapsae L596_g27472 I 0.760
PPA06637 Pristionchus pacificus PPA06637 I 0.759
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I 0.759
L893_g3565 Steinernema glaseri L893_g3565 I 0.750
L892_g17612 Steinernema scapterisci L892_g17612 I 0.746