CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PPA24481
(
Pristionchus pacificus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
PPA24481
T305926_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.865
0.600
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.848
0.586
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.809
0.643
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.804
0.629
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA24481
Nuclear receptor
104
175
EDCAVCGDTATGYHYEVPSCNGCKTFFRRTILAQRKFACKKGRDCFKVLPKEKRCQCRSCRYDKCVEVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus pacificus
TFs
217 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold552-EXSNAP2012.17
Pristionchus exspectatus
scaffold552-EXSNAP2012.17
I
0.994
CBG10857
Caenorhabditis briggsae
CBG10857
I
0.973
CJA00680
Caenorhabditis japonica
CJA00680
I
0.973
CRE00606
Caenorhabditis remanei
CRE00606
I
0.973
nhr-173
Caenorhabditis elegans
WBGene00016975
I
0.973
ANCCEY_01254
Ancylostoma ceylanicum
ANCCEY_01254
I
0.964
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.961
LOAG_16377
Loa loa
LOAG_16377
I
0.959
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.959
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.958
L889_g1891
Steinernema feltiae
L889_g1891
I
0.957
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.956
ANCCAN_09880
Ancylostoma caninum
ANCCAN_09880
I
0.956
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.955
L893_g28857
Steinernema glaseri
L893_g28857
I
0.955
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.954
CJA08896
Caenorhabditis japonica
CJA08896
I
0.954
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.954
NECAME_01944
Necator americanus
NECAME_01944
I
0.954
HPBE_0001246601
Heligmosomoides bakeri
HPBE_0001246601
I
0.952
NECAME_08394
Necator americanus
NECAME_08394
I
0.952
CRE00149
Caenorhabditis remanei
CRE00149
I
0.951
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.951
HCOI01525900
Haemonchus contortus
HCOI01525900
I
0.951
PPA21777
Pristionchus pacificus
PPA21777
I
0.948
L889_g1557
Steinernema feltiae
L889_g1557
I
0.948
L898_g9866
Steinernema monticolum
L898_g9866
I
0.948
PPA10975
Pristionchus pacificus
PPA10975
N
0.947
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.945
ASU_03657
Ascaris suum
ASU_03657
I
0.945
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.945
PEQ_0000722401
Parascaris equorum
PEQ_0000722401
I
0.945
scaffold43-EXSNAP2012.41
Pristionchus exspectatus
scaffold43-EXSNAP2012.41
I
0.945
HPLM_0000769401
Haemonchus placei
HPLM_0000769401
I
0.944
L893_g3565
Steinernema glaseri
L893_g3565
I
0.942
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.941
scaffold426-EXSNAP2012.35
Pristionchus exspectatus
scaffold426-EXSNAP2012.35
I
0.937
PPA24468
Pristionchus pacificus
PPA24468
I
0.931
PPA29597
Pristionchus pacificus
PPA29597
I
0.931
scaffold265-EXSNAP2012.2
Pristionchus exspectatus
scaffold265-EXSNAP2012.2
I
0.931
HPBE_0000704501
Heligmosomoides bakeri
HPBE_0000704501
I
0.927
scaffold552-EXSNAP2012.18
Pristionchus exspectatus
scaffold552-EXSNAP2012.18
I
0.921
PPA06637
Pristionchus pacificus
PPA06637
I
0.901
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.898
Hba_12763
Heterorhabditis bacteriophora
Hba_12763
I
0.895
nhr-136
Caenorhabditis elegans
WBGene00003726
I
0.892
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.889
scaffold598-EXSNAP2012.5
Pristionchus exspectatus
scaffold598-EXSNAP2012.5
I
0.887
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.883
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.883
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.883
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.878
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.877
scaffold251-EXSNAP2012.44
Pristionchus exspectatus
scaffold251-EXSNAP2012.44
I
0.875
scaffold826-EXSNAP2012.10
Pristionchus exspectatus
scaffold826-EXSNAP2012.10
I
0.875
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.872
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.872
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.872
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.870
CBN29725
Caenorhabditis brenneri
CBN29725
I
0.868
CRE27053
Caenorhabditis remanei
CRE27053
I
0.868
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.868
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.867
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.867
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.867
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.867
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.866
L596_g23863
Steinernema carpocapsae
L596_g23863
I
0.866
L893_g13285
Steinernema glaseri
L893_g13285
I
0.866
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.865
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.865
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.865
CRE08259
Caenorhabditis remanei
CRE08259
I
0.865
LOAG_08615
Loa loa
LOAG_08615
I
0.865
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.865
ASU_03870
Ascaris suum
ASU_03870
I
0.865
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.865
L889_g17247
Steinernema feltiae
L889_g17247
I
0.865
L898_g26357
Steinernema monticolum
L898_g26357
I
0.865
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.865
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.865
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.864
TCLT_0000256201
Thelazia callipaeda
TCLT_0000256201
I
0.864
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.863
Bm4980
Brugia malayi
Bm4980
I
0.862
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.862
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.860
CRE25378
Caenorhabditis remanei
CRE25378
I
0.859
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.859
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.859
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.859
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.859
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.858
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.858
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.857
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.857
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.857
L893_g25227
Steinernema glaseri
L893_g25227
I
0.857
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.856
ASU_12501
Ascaris suum
ASU_12501
I
0.856
NECAME_00872
Necator americanus
NECAME_00872
I
0.856
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.850
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.850
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.850
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.850
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.850
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.850
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.850
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.848
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.848
CJA13458
Caenorhabditis japonica
CJA13458
I
0.848
CRE03310
Caenorhabditis remanei
CRE03310
I
0.848
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.848
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.848
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.848
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.848
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.848
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.848
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.845
L889_g29879
Steinernema feltiae
L889_g29879
I
0.845
L893_g3010
Steinernema glaseri
L893_g3010
I
0.845
L898_g2764
Steinernema monticolum
L898_g2764
I
0.845
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.845
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.845
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.844
L889_g7780
Steinernema feltiae
L889_g7780
I
0.844
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.844
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.844
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.844
Bm5319
Brugia malayi
Bm5319
I
0.842
LOAG_00300
Loa loa
LOAG_00300
I
0.842
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.842
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.842
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.842
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.842
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.842
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.842
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.842
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.842
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.842
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.841
L898_g22454
Steinernema monticolum
L898_g22454
I
0.840
scaffold92-EXSNAP2012.31
Pristionchus exspectatus
scaffold92-EXSNAP2012.31
N
0.840
BXY_1375200
Bursaphelenchus xylophilus
BXY_1375200
I
0.838
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.837
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.834
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.833
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.833
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.833
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.828
SMUV_0001072301
Syphacia muris
SMUV_0001072301
I
0.822
CBG09380
Caenorhabditis briggsae
CBG09380
I
0.817
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
I
0.816
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
I
0.816
MhA1_Contig320.frz3.gene45
Meloidogyne hapla
MhA1_Contig320.frz3.gene45
I
0.816
CBG23380
Caenorhabditis briggsae
CBG23380
D
0.809
CBN28497
Caenorhabditis brenneri
CBN28497
I
0.809
CRE27050
Caenorhabditis remanei
CRE27050
I
0.809
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.807
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.806
nhr-154
Caenorhabditis elegans
WBGene00007547
D
0.804
L889_g22425
Steinernema feltiae
L889_g22425
N
0.803
PPA16374
Pristionchus pacificus
PPA16374
I
0.790
nhr-153
Caenorhabditis elegans
WBGene00007546
I
0.790
L893_g22683
Steinernema glaseri
L893_g22683
I
0.790
scaffold204-EXSNAP2012.8
Pristionchus exspectatus
scaffold204-EXSNAP2012.8
N
0.790
TCNE_0001076801
Toxocara canis
TCNE_0001076801
N
0.787
CJA01292
Caenorhabditis japonica
CJA01292
I
0.786
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.786
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
I
0.786
CRE30787
Caenorhabditis remanei
CRE30787
I
0.785
PPA20196
Pristionchus pacificus
PPA20196
I
0.785
L889_g8914
Steinernema feltiae
L889_g8914
I
0.785
scaffold290-EXSNAP2012.30
Pristionchus exspectatus
scaffold290-EXSNAP2012.30
I
0.785
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.784
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.784
CBN28791
Caenorhabditis brenneri
CBN28791
I
0.784
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.782
CBG23381
Caenorhabditis briggsae
CBG23381
I
0.781
SSTP_0001081300
Strongyloides stercoralis
SSTP_0001081300
I
0.781
CJA41479
Caenorhabditis japonica
CJA41479
I
0.780
CRE26981
Caenorhabditis remanei
CRE26981
I
0.778
CRE27052
Caenorhabditis remanei
CRE27052
I
0.777
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.776
ACOC_0000869501
Angiostrongylus costaricensis
ACOC_0000869501
I
0.773
HPBE_0001154501
Heligmosomoides bakeri
HPBE_0001154501
I
0.773
scaffold488-EXSNAP2012.17
Pristionchus exspectatus
scaffold488-EXSNAP2012.17
I
0.772
L596_g14199
Steinernema carpocapsae
L596_g14199
I
0.771
L892_g2422
Steinernema scapterisci
L892_g2422
I
0.771
L893_g15045
Steinernema glaseri
L893_g15045
I
0.770
Minc13747
Meloidogyne incognita
Minc13747
I
0.768
Minc17538
Meloidogyne incognita
Minc17538
I
0.768
MhA1_Contig817.frz3.gene1
Meloidogyne hapla
MhA1_Contig817.frz3.gene1
I
0.768
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.767
ASU_10584
Ascaris suum
ASU_10584
I
0.767
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.767
L889_g22901
Steinernema feltiae
L889_g22901
I
0.767
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.767
L893_g15276
Steinernema glaseri
L893_g15276
I
0.767
L898_g8573
Steinernema monticolum
L898_g8573
I
0.767
L898_g30390
Steinernema monticolum
L898_g30390
I
0.766
WBGene00240560
Onchocerca volvulus
WBGene00240560
I
0.764
nOo.2.0.1.g03859
Onchocerca ochengi
nOo.2.0.1.g03859
I
0.764
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.761
PPA27013
Pristionchus pacificus
PPA27013
N
0.756
EEL_0000204901
Elaeophora elaphi
EEL_0000204901
I
0.756
nAv.1.0.1.g09196
Acanthocheilonema viteae
nAv.1.0.1.g09196
I
0.756
PTRK_0000194200
Parastrongyloides trichosuri
PTRK_0000194200
I
0.756
GPLIN_000284100
Globodera pallida
GPLIN_000284100
I
0.755
LOAG_08636
Loa loa
LOAG_08636
I
0.754
HCOI00673400
Haemonchus contortus
HCOI00673400
I
0.754
HCOI01687000
Haemonchus contortus
HCOI01687000
I
0.754
NBR_0001576001
Nippostrongylus brasiliensis
NBR_0001576001
I
0.754
nDi.2.2.2.g09348
Dirofilaria immitis
nDi.2.2.2.g09348
I
0.754
DICVIV_03784
Dictyocaulus viviparus
DICVIV_03784
I
0.753
nLs.2.1.2.g04051
Litomosoides sigmodontis
nLs.2.1.2.g04051
I
0.751
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.747