CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-68
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003658
T306182_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.944
0.614
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.929
0.657
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
H12C20.3a.1
Nuclear receptor
5
74
EVCLVCQDFSSGYHYGIPSCNGCKTFFRRTVMKKQKFVCQFDQNCPVDKSIRCACRFCRFEKCLKVGMDK
H12C20.3a.2
Nuclear receptor
5
74
EVCLVCQDFSSGYHYGIPSCNGCKTFFRRTVMKKQKFVCQFDQNCPVDKSIRCACRFCRFEKCLKVGMDK
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
223 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG23318
Caenorhabditis briggsae
CBG23318
I
0.995
CRE26982
Caenorhabditis remanei
CRE26982
I
0.994
CBN30215
Caenorhabditis brenneri
CBN30215
I
0.993
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.981
CJA37776
Caenorhabditis japonica
CJA37776
I
0.980
CJA01292
Caenorhabditis japonica
CJA01292
I
0.974
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.971
CRE26981
Caenorhabditis remanei
CRE26981
I
0.971
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.966
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.966
CRE25378
Caenorhabditis remanei
CRE25378
I
0.966
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.964
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.960
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.959
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.959
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.958
ASU_12501
Ascaris suum
ASU_12501
I
0.958
NECAME_00872
Necator americanus
NECAME_00872
I
0.958
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.958
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.958
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.957
L893_g25227
Steinernema glaseri
L893_g25227
I
0.957
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.954
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.954
L889_g17247
Steinernema feltiae
L889_g17247
I
0.952
L898_g26357
Steinernema monticolum
L898_g26357
I
0.952
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.951
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.951
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.949
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.949
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.949
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.948
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.948
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.946
CRE09267
Caenorhabditis remanei
CRE09267
I
0.945
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.944
CBN03435
Caenorhabditis brenneri
CBN03435
N
0.944
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.944
CBN19580
Caenorhabditis brenneri
CBN19580
N
0.944
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.944
CRE08259
Caenorhabditis remanei
CRE08259
I
0.944
LOAG_08615
Loa loa
LOAG_08615
I
0.944
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.944
ASU_03870
Ascaris suum
ASU_03870
I
0.944
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.944
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.944
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.944
L893_g13285
Steinernema glaseri
L893_g13285
I
0.943
nhr-114
Caenorhabditis elegans
WBGene00003704
N
0.942
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.942
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.941
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.941
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.941
Bm4980
Brugia malayi
Bm4980
I
0.937
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.937
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.935
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.934
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.933
nhr-40
Caenorhabditis elegans
WBGene00003630
I
0.930
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.929
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.929
CJA13458
Caenorhabditis japonica
CJA13458
I
0.929
CRE03310
Caenorhabditis remanei
CRE03310
I
0.929
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.929
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.929
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.929
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.929
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.926
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.926
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.926
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.926
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.926
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.926
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.924
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.924
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.924
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.918
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.916
L889_g29879
Steinernema feltiae
L889_g29879
I
0.916
L893_g3010
Steinernema glaseri
L893_g3010
I
0.916
L898_g2764
Steinernema monticolum
L898_g2764
I
0.916
Bm5319
Brugia malayi
Bm5319
I
0.915
LOAG_00300
Loa loa
LOAG_00300
I
0.915
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.915
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.915
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.915
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.915
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.915
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.915
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.913
L889_g7780
Steinernema feltiae
L889_g7780
I
0.913
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.913
L898_g22454
Steinernema monticolum
L898_g22454
I
0.913
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.911
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.909
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.909
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.909
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.909
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.909
WUBG_08038
Wuchereria bancrofti
WUBG_08038
I
0.896
Bm5520
Brugia malayi
Bm5520
I
0.896
LOAG_03407
Loa loa
LOAG_03407
I
0.896
WBGene00240723
Onchocerca volvulus
WBGene00240723
I
0.896
BTMF_0001127801
Brugia timori
BTMF_0001127801
I
0.896
DME_0001010101
Dracunculus medinensis
DME_0001010101
I
0.896
EEL_0000987201
Elaeophora elaphi
EEL_0000987201
I
0.896
nAv.1.0.1.g02923
Acanthocheilonema viteae
nAv.1.0.1.g02923
I
0.896
nOo.2.0.1.g03355
Onchocerca ochengi
nOo.2.0.1.g03355
I
0.896
SMUV_0000795201
Syphacia muris
SMUV_0000795201
I
0.895
CBG01439
Caenorhabditis briggsae
CBG01439
N
0.892
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.891
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.884
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.882
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.882
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.882
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.882
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.879
CBG02077
Caenorhabditis briggsae
CBG02077
I
0.875
CBN21115
Caenorhabditis brenneri
CBN21115
I
0.875
CRE07549
Caenorhabditis remanei
CRE07549
I
0.875
ACOC_0000048701
Angiostrongylus costaricensis
ACOC_0000048701
I
0.875
ANCCAN_24419
Ancylostoma caninum
ANCCAN_24419
I
0.875
DICVIV_12420
Dictyocaulus viviparus
DICVIV_12420
I
0.875
TELCIR_00491
Teladorsagia circumcincta
TELCIR_00491
I
0.875
NECAME_06702
Necator americanus
NECAME_06702
I
0.871
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.868
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.868
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.868
L898_g30390
Steinernema monticolum
L898_g30390
I
0.864
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.861
PTRK_0001163100
Parastrongyloides trichosuri
PTRK_0001163100
I
0.859
SPAL_0001084400
Strongyloides papillosus
SPAL_0001084400
I
0.859
SPAL_0001084500
Strongyloides papillosus
SPAL_0001084500
I
0.859
SSTP_0001035300
Strongyloides stercoralis
SSTP_0001035300
I
0.859
SVE_0956400
Strongyloides venezuelensis
SVE_0956400
I
0.859
HCOI00592600
Haemonchus contortus
HCOI00592600
I
0.851
OESDEN_04341
Oesophagostomum dentatum
OESDEN_04341
I
0.849
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
I
0.845
ASU_02770
Ascaris suum
ASU_02770
I
0.833
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.833
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.833
L596_g14199
Steinernema carpocapsae
L596_g14199
I
0.829
L892_g2422
Steinernema scapterisci
L892_g2422
I
0.829
L889_g8914
Steinernema feltiae
L889_g8914
I
0.828
NECAME_01944
Necator americanus
NECAME_01944
I
0.828
ANCCAN_09880
Ancylostoma caninum
ANCCAN_09880
I
0.827
L893_g22683
Steinernema glaseri
L893_g22683
I
0.827
PPA16374
Pristionchus pacificus
PPA16374
I
0.826
L889_g22425
Steinernema feltiae
L889_g22425
N
0.826
L893_g15045
Steinernema glaseri
L893_g15045
I
0.825
CBN11572
Caenorhabditis brenneri
CBN11572
I
0.822
nhr-35
Caenorhabditis elegans
WBGene00003628
I
0.822
HPBE_0001246601
Heligmosomoides bakeri
HPBE_0001246601
I
0.819
CBG14485
Caenorhabditis briggsae
CBG14485
I
0.817
CJA16040
Caenorhabditis japonica
CJA16040
I
0.817
CRE00809
Caenorhabditis remanei
CRE00809
I
0.817
L596_g702
Steinernema carpocapsae
L596_g702
I
0.816
L892_g5067
Steinernema scapterisci
L892_g5067
I
0.816
HCOI01525900
Haemonchus contortus
HCOI01525900
I
0.814
L898_g9866
Steinernema monticolum
L898_g9866
I
0.808
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.806
L889_g1557
Steinernema feltiae
L889_g1557
I
0.806
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.798
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.798
L893_g28857
Steinernema glaseri
L893_g28857
I
0.798
LOAG_16377
Loa loa
LOAG_16377
I
0.796
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.796
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.793
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.790
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.790
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.790
RSKR_0000600000
Rhabditophanes kr3021
RSKR_0000600000
N
0.790
CRE30787
Caenorhabditis remanei
CRE30787
I
0.789
scaffold584-EXSNAP2012.2
Pristionchus exspectatus
scaffold584-EXSNAP2012.2
I
0.788
scaffold726-EXSNAP2012.5
Pristionchus exspectatus
scaffold726-EXSNAP2012.5
I
0.788
Minc13747
Meloidogyne incognita
Minc13747
I
0.785
Minc17538
Meloidogyne incognita
Minc17538
I
0.785
MhA1_Contig817.frz3.gene1
Meloidogyne hapla
MhA1_Contig817.frz3.gene1
I
0.785
NECAME_08394
Necator americanus
NECAME_08394
I
0.784
PPA20196
Pristionchus pacificus
PPA20196
I
0.783
scaffold290-EXSNAP2012.30
Pristionchus exspectatus
scaffold290-EXSNAP2012.30
I
0.783
BXY_0988800
Bursaphelenchus xylophilus
BXY_0988800
I
0.782
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.782
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.781
CBG00093
Caenorhabditis briggsae
CBG00093
I
0.780
CBN07240
Caenorhabditis brenneri
CBN07240
I
0.780
CJA06153
Caenorhabditis japonica
CJA06153
I
0.780
CRE24074
Caenorhabditis remanei
CRE24074
I
0.780
PPA22443
Pristionchus pacificus
PPA22443
I
0.780
nhr-17
Caenorhabditis elegans
WBGene00003616
I
0.780
scaffold107-EXSNAP2012.33
Pristionchus exspectatus
scaffold107-EXSNAP2012.33
I
0.780
GPLIN_000284100
Globodera pallida
GPLIN_000284100
I
0.779
scaffold43-EXSNAP2012.41
Pristionchus exspectatus
scaffold43-EXSNAP2012.41
I
0.770
SSTP_0000408200
Strongyloides stercoralis
SSTP_0000408200
I
0.769
SVE_1749000
Strongyloides venezuelensis
SVE_1749000
I
0.769
ASU_10584
Ascaris suum
ASU_10584
I
0.767
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.767
L889_g22901
Steinernema feltiae
L889_g22901
I
0.767
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.767
L893_g15276
Steinernema glaseri
L893_g15276
I
0.767
L898_g8573
Steinernema monticolum
L898_g8573
I
0.767
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.764
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.763
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.763
CJA08896
Caenorhabditis japonica
CJA08896
I
0.763
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.763
ACOC_0000744201
Angiostrongylus costaricensis
ACOC_0000744201
I
0.763
ANCCAN_19046
Ancylostoma caninum
ANCCAN_19046
I
0.763
ANCDUO_17367
Ancylostoma duodenale
ANCDUO_17367
I
0.763
DICVIV_13545
Dictyocaulus viviparus
DICVIV_13545
I
0.763
HCOI00052900
Haemonchus contortus
HCOI00052900
I
0.763
L893_g3565
Steinernema glaseri
L893_g3565
I
0.763
NECAME_01070
Necator americanus
NECAME_01070
I
0.763
SPAL_0000231300
Strongyloides papillosus
SPAL_0000231300
I
0.762
SSTP_0001170700
Strongyloides stercoralis
SSTP_0001170700
I
0.760
SPAL_0001238400
Strongyloides papillosus
SPAL_0001238400
I
0.759
SVE_0697700
Strongyloides venezuelensis
SVE_0697700
I
0.759
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.756
BXY_1375200
Bursaphelenchus xylophilus
BXY_1375200
I
0.755
PPA21777
Pristionchus pacificus
PPA21777
I
0.754
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.754
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.746