CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMUV_0000795201
(
Syphacia muris
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
SMUV_0000795201
T310423_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.879
0.629
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.747
0.529
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMUV_0000795201-mRNA-1
Nuclear receptor
13
82
TLCVVCSDLASGIHYSVASCNGCKTFFRRAVVNKQTFQCQFRNECVVDKSVRCGCRSCRLKKCFHMGMDP
Links
Other
Nuclear receptor
family TFs
Other
Syphacia muris
TFs
185 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WUBG_08038
Wuchereria bancrofti
WUBG_08038
I
0.989
Bm5520
Brugia malayi
Bm5520
I
0.989
LOAG_03407
Loa loa
LOAG_03407
I
0.989
WBGene00240723
Onchocerca volvulus
WBGene00240723
I
0.989
BTMF_0001127801
Brugia timori
BTMF_0001127801
I
0.989
DME_0001010101
Dracunculus medinensis
DME_0001010101
I
0.989
EEL_0000987201
Elaeophora elaphi
EEL_0000987201
I
0.989
nAv.1.0.1.g02923
Acanthocheilonema viteae
nAv.1.0.1.g02923
I
0.989
nOo.2.0.1.g03355
Onchocerca ochengi
nOo.2.0.1.g03355
I
0.989
CBG02077
Caenorhabditis briggsae
CBG02077
I
0.982
CBN21115
Caenorhabditis brenneri
CBN21115
I
0.982
CRE07549
Caenorhabditis remanei
CRE07549
I
0.982
ACOC_0000048701
Angiostrongylus costaricensis
ACOC_0000048701
I
0.982
ANCCAN_24419
Ancylostoma caninum
ANCCAN_24419
I
0.982
DICVIV_12420
Dictyocaulus viviparus
DICVIV_12420
I
0.982
TELCIR_00491
Teladorsagia circumcincta
TELCIR_00491
I
0.982
NECAME_06702
Necator americanus
NECAME_06702
I
0.978
nhr-40
Caenorhabditis elegans
WBGene00003630
I
0.973
ASIM_0001238601
Anisakis simplex
ASIM_0001238601
N
0.941
ASU_10584
Ascaris suum
ASU_10584
I
0.911
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.911
L889_g22901
Steinernema feltiae
L889_g22901
I
0.911
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.911
L893_g15276
Steinernema glaseri
L893_g15276
I
0.911
L898_g8573
Steinernema monticolum
L898_g8573
I
0.911
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.907
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.906
NBR_0001576001
Nippostrongylus brasiliensis
NBR_0001576001
I
0.904
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.899
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.898
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
I
0.897
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
I
0.897
L596_g702
Steinernema carpocapsae
L596_g702
I
0.896
L892_g5067
Steinernema scapterisci
L892_g5067
I
0.896
CBG23318
Caenorhabditis briggsae
CBG23318
I
0.895
nhr-68
Caenorhabditis elegans
WBGene00003658
I
0.895
CRE26982
Caenorhabditis remanei
CRE26982
I
0.894
HCOI00673400
Haemonchus contortus
HCOI00673400
I
0.894
HCOI01687000
Haemonchus contortus
HCOI01687000
I
0.894
MhA1_Contig320.frz3.gene45
Meloidogyne hapla
MhA1_Contig320.frz3.gene45
I
0.893
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.892
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.884
ACOC_0000869501
Angiostrongylus costaricensis
ACOC_0000869501
I
0.884
HPBE_0001154501
Heligmosomoides bakeri
HPBE_0001154501
I
0.884
CBG09380
Caenorhabditis briggsae
CBG09380
I
0.883
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.882
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.882
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.879
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.879
CJA13458
Caenorhabditis japonica
CJA13458
I
0.879
CRE03310
Caenorhabditis remanei
CRE03310
I
0.879
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.879
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.879
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.879
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.879
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.875
CRE25378
Caenorhabditis remanei
CRE25378
I
0.874
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.873
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.873
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.873
CBN30215
Caenorhabditis brenneri
CBN30215
I
0.870
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.866
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.866
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.865
L893_g25227
Steinernema glaseri
L893_g25227
I
0.865
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.864
ASU_12501
Ascaris suum
ASU_12501
I
0.864
NECAME_00872
Necator americanus
NECAME_00872
I
0.864
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.863
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.861
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.861
CRE30787
Caenorhabditis remanei
CRE30787
I
0.861
L596_g14199
Steinernema carpocapsae
L596_g14199
I
0.860
L892_g2422
Steinernema scapterisci
L892_g2422
I
0.860
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.860
PTRK_0000194200
Parastrongyloides trichosuri
PTRK_0000194200
I
0.859
DICVIV_03784
Dictyocaulus viviparus
DICVIV_03784
I
0.858
L889_g8914
Steinernema feltiae
L889_g8914
I
0.857
L893_g22683
Steinernema glaseri
L893_g22683
I
0.857
Bm5319
Brugia malayi
Bm5319
I
0.855
LOAG_00300
Loa loa
LOAG_00300
I
0.855
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.855
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.855
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.855
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.855
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.855
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.853
CJA01292
Caenorhabditis japonica
CJA01292
I
0.853
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.853
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.853
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.853
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.853
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.853
L898_g30390
Steinernema monticolum
L898_g30390
I
0.853
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.852
CBG00093
Caenorhabditis briggsae
CBG00093
I
0.850
CJA06153
Caenorhabditis japonica
CJA06153
I
0.850
CJA37776
Caenorhabditis japonica
CJA37776
I
0.850
CRE24074
Caenorhabditis remanei
CRE24074
I
0.850
nhr-17
Caenorhabditis elegans
WBGene00003616
I
0.850
CBN07240
Caenorhabditis brenneri
CBN07240
I
0.849
BXY_0988800
Bursaphelenchus xylophilus
BXY_0988800
I
0.849
L889_g22425
Steinernema feltiae
L889_g22425
N
0.847
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.846
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.846
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.845
L889_g29879
Steinernema feltiae
L889_g29879
I
0.845
L893_g3010
Steinernema glaseri
L893_g3010
I
0.845
L898_g2764
Steinernema monticolum
L898_g2764
I
0.845
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.845
L893_g15045
Steinernema glaseri
L893_g15045
I
0.840
CRE26981
Caenorhabditis remanei
CRE26981
I
0.838
scaffold584-EXSNAP2012.2
Pristionchus exspectatus
scaffold584-EXSNAP2012.2
I
0.834
scaffold726-EXSNAP2012.5
Pristionchus exspectatus
scaffold726-EXSNAP2012.5
I
0.834
ASU_02770
Ascaris suum
ASU_02770
I
0.822
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.822
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.822
PTRK_0001163100
Parastrongyloides trichosuri
PTRK_0001163100
I
0.819
SPAL_0001084400
Strongyloides papillosus
SPAL_0001084400
I
0.819
SPAL_0001084500
Strongyloides papillosus
SPAL_0001084500
I
0.819
SSTP_0001035300
Strongyloides stercoralis
SSTP_0001035300
I
0.819
SVE_0956400
Strongyloides venezuelensis
SVE_0956400
I
0.819
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.817
L889_g7780
Steinernema feltiae
L889_g7780
I
0.817
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.817
L898_g22454
Steinernema monticolum
L898_g22454
I
0.817
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.816
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.816
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.816
SSTP_0000408200
Strongyloides stercoralis
SSTP_0000408200
I
0.800
SVE_1749000
Strongyloides venezuelensis
SVE_1749000
I
0.800
PPA20196
Pristionchus pacificus
PPA20196
I
0.798
scaffold290-EXSNAP2012.30
Pristionchus exspectatus
scaffold290-EXSNAP2012.30
I
0.798
SPAL_0000231300
Strongyloides papillosus
SPAL_0000231300
I
0.798
LOAG_16377
Loa loa
LOAG_16377
I
0.795
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.795
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.792
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.792
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.792
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.792
ACOC_0000744201
Angiostrongylus costaricensis
ACOC_0000744201
I
0.791
ANCCAN_19046
Ancylostoma caninum
ANCCAN_19046
I
0.791
ANCDUO_17367
Ancylostoma duodenale
ANCDUO_17367
I
0.791
DICVIV_13545
Dictyocaulus viviparus
DICVIV_13545
I
0.791
HCOI00052900
Haemonchus contortus
HCOI00052900
I
0.791
NECAME_01070
Necator americanus
NECAME_01070
I
0.791
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.787
PPA16374
Pristionchus pacificus
PPA16374
I
0.786
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.780
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.778
SSTP_0001081300
Strongyloides stercoralis
SSTP_0001081300
I
0.778
RSKR_0001171300
Rhabditophanes kr3021
RSKR_0001171300
I
0.777
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.776
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.775
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.774
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.774
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.774
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.773
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.773
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.773
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.768
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.767
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.767
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.767
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.759
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.759
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.759
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.757
Hba_14828
Heterorhabditis bacteriophora
Hba_14828
N
0.753
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.751
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.749
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.749
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.747
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.747
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.747
CRE08259
Caenorhabditis remanei
CRE08259
I
0.747
LOAG_08615
Loa loa
LOAG_08615
I
0.747
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.747
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.747
ASU_03870
Ascaris suum
ASU_03870
I
0.747
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.747
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.747
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.747
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.747
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.746