CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RSKR_0001067400
(
Rhabditophanes kr3021
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
RSKR_0001067400
T310142_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.821
0.571
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RSKR_0001067400.1
Nuclear receptor
35
104
LECSICHDRAAGKHYSVVSCNGCKGFFRRTIRRNYKYTCRFDKKCIIDKLSRANCRACRFDRCIHFGMKI
Links
Other
Nuclear receptor
family TFs
Other
Rhabditophanes kr3021
TFs
109 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
DME_0000747901
Dracunculus medinensis
DME_0000747901
I
0.916
SPAL_0001238400
Strongyloides papillosus
SPAL_0001238400
I
0.915
SVE_0697700
Strongyloides venezuelensis
SVE_0697700
I
0.915
TCLT_0000612301
Thelazia callipaeda
TCLT_0000612301
I
0.913
ASU_13587
Ascaris suum
ASU_13587
I
0.896
WBGene00240560
Onchocerca volvulus
WBGene00240560
I
0.893
nOo.2.0.1.g03859
Onchocerca ochengi
nOo.2.0.1.g03859
I
0.893
BXY_1375200
Bursaphelenchus xylophilus
BXY_1375200
I
0.891
SSTP_0001170700
Strongyloides stercoralis
SSTP_0001170700
I
0.888
LOAG_08636
Loa loa
LOAG_08636
I
0.887
EEL_0000204901
Elaeophora elaphi
EEL_0000204901
I
0.887
nAv.1.0.1.g09196
Acanthocheilonema viteae
nAv.1.0.1.g09196
I
0.887
nDi.2.2.2.g09348
Dirofilaria immitis
nDi.2.2.2.g09348
I
0.887
nLs.2.1.2.g04051
Litomosoides sigmodontis
nLs.2.1.2.g04051
I
0.884
Minc13747
Meloidogyne incognita
Minc13747
I
0.879
Minc17538
Meloidogyne incognita
Minc17538
I
0.879
MhA1_Contig817.frz3.gene1
Meloidogyne hapla
MhA1_Contig817.frz3.gene1
I
0.879
PPA22443
Pristionchus pacificus
PPA22443
I
0.875
scaffold107-EXSNAP2012.33
Pristionchus exspectatus
scaffold107-EXSNAP2012.33
I
0.875
GPLIN_000284100
Globodera pallida
GPLIN_000284100
I
0.872
L596_g23123
Steinernema carpocapsae
L596_g23123
I
0.865
L892_g4134
Steinernema scapterisci
L892_g4134
I
0.863
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.863
L889_g11570
Steinernema feltiae
L889_g11570
I
0.862
L893_g21283
Steinernema glaseri
L893_g21283
I
0.862
L898_g23058
Steinernema monticolum
L898_g23058
I
0.862
PTRK_0000861400
Parastrongyloides trichosuri
PTRK_0000861400
I
0.860
L893_g13285
Steinernema glaseri
L893_g13285
I
0.851
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.850
L889_g17247
Steinernema feltiae
L889_g17247
I
0.850
L898_g26357
Steinernema monticolum
L898_g26357
I
0.850
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.847
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.847
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.847
MhA1_Contig691.frz3.gene13
Meloidogyne hapla
MhA1_Contig691.frz3.gene13
I
0.841
Minc11307
Meloidogyne incognita
Minc11307
I
0.838
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.832
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.832
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.832
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.828
RSKR_0001175400
Rhabditophanes kr3021
RSKR_0001175400
I
0.823
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.823
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.821
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.821
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.821
CRE08259
Caenorhabditis remanei
CRE08259
I
0.821
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.821
ASU_03870
Ascaris suum
ASU_03870
I
0.821
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.821
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.820
LOAG_08615
Loa loa
LOAG_08615
I
0.819
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.812
nhr-64
Caenorhabditis elegans
WBGene00003654
I
0.811
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.811
HCOI00592600
Haemonchus contortus
HCOI00592600
I
0.811
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.811
OESDEN_04341
Oesophagostomum dentatum
OESDEN_04341
I
0.807
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.804
SMUV_0000369301
Syphacia muris
SMUV_0000369301
I
0.801
Bm4980
Brugia malayi
Bm4980
I
0.800
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.800
ALUE_0000387101
Ascaris lumbricoides
ALUE_0000387101
I
0.799
ASU_00859
Ascaris suum
ASU_00859
I
0.799
CBN11572
Caenorhabditis brenneri
CBN11572
I
0.791
nhr-35
Caenorhabditis elegans
WBGene00003628
I
0.791
CBG10857
Caenorhabditis briggsae
CBG10857
I
0.789
CRE00606
Caenorhabditis remanei
CRE00606
I
0.789
nhr-173
Caenorhabditis elegans
WBGene00016975
I
0.789
HCOI00891400
Haemonchus contortus
HCOI00891400
I
0.787
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.787
scaffold178-EXSNAP2012.20
Pristionchus exspectatus
scaffold178-EXSNAP2012.20
N
0.787
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.787
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.787
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.787
CBG14485
Caenorhabditis briggsae
CBG14485
I
0.785
CJA16040
Caenorhabditis japonica
CJA16040
I
0.785
CRE00809
Caenorhabditis remanei
CRE00809
I
0.785
L889_g17254
Steinernema feltiae
L889_g17254
I
0.784
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.784
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.784
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.784
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.783
L898_g7537
Steinernema monticolum
L898_g7537
I
0.782
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.782
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.781
CBG04204
Caenorhabditis briggsae
CBG04204
I
0.775
L596_g11029
Steinernema carpocapsae
L596_g11029
I
0.775
L892_g1520
Steinernema scapterisci
L892_g1520
I
0.775
ANCCAN_08267
Ancylostoma caninum
ANCCAN_08267
I
0.770
NBR_0001473401
Nippostrongylus brasiliensis
NBR_0001473401
I
0.770
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.769
Minc02318
Meloidogyne incognita
Minc02318
I
0.766
Minc05752
Meloidogyne incognita
Minc05752
I
0.766
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.766
NECAME_11999
Necator americanus
NECAME_11999
I
0.762
L889_g1557
Steinernema feltiae
L889_g1557
I
0.760
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.757
L898_g9866
Steinernema monticolum
L898_g9866
I
0.757
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.755
scaffold598-EXSNAP2012.5
Pristionchus exspectatus
scaffold598-EXSNAP2012.5
I
0.755
L893_g3565
Steinernema glaseri
L893_g3565
I
0.753
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.750
CRE30089
Caenorhabditis remanei
CRE30089
I
0.748
scaffold251-EXSNAP2012.44
Pristionchus exspectatus
scaffold251-EXSNAP2012.44
I
0.748
scaffold826-EXSNAP2012.10
Pristionchus exspectatus
scaffold826-EXSNAP2012.10
I
0.748
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.747
CJA08896
Caenorhabditis japonica
CJA08896
I
0.747
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.747
L893_g28857
Steinernema glaseri
L893_g28857
I
0.746