RFX5 (Pteropus vampyrus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPVAG00000011680 T318485_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.792 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.792 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.792 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.792 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.792 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.792 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.792 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.792 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.792 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.792 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.792 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.792 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.792 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.792 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.792 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000011009 RFX 89 168

Links

Other RFX family TFs
Other Pteropus vampyrus TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28345.m000111 Ricinus communis 28345.m000111 N
29603.m000536 Ricinus communis 29603.m000536 I
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I
AT4G17810 Arabidopsis thaliana AT4G17810 I
BGIOSGA015610 Oryza indica BGIOSGA015610 I
BGIOSGA018378 Oryza indica BGIOSGA018378 I
BGIOSGA033510 Oryza indica BGIOSGA033510 I
Bo1g017920 Brassica oleracea Bo1g017920 I
Bo1g102390 Brassica oleracea Bo1g102390 I
Bo3g003640 Brassica oleracea Bo3g003640 I
Bo9g176590 Brassica oleracea Bo9g176590 I
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I
Bra005874 Brassica rapa Bra005874 I
Bra009160 Brassica rapa Bra009160 I
Bra013257 Brassica rapa Bra013257 I
Bra023759 Brassica rapa Bra023759 I
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I
Carubv10002935m.g Capsella rubella Carubv10002935m.g I
Carubv10006881m.g Capsella rubella Carubv10006881m.g I
Carubv10016073m.g Capsella rubella Carubv10016073m.g I
Carubv10024766m.g Capsella rubella Carubv10024766m.g I
cassava14614.m1 Manihot esculenta cassava14614.m1 I
cassava22028.m1 Manihot esculenta cassava22028.m1 I
cassava3359.m1 Manihot esculenta cassava3359.m1 I
cassava40050.m1 Manihot esculenta cassava40050.m1 I
cassava4410.m1 Manihot esculenta cassava4410.m1 N
Ca_12901 Cicer arietinum Ca_12901 I
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I
Cla008944 Citrullus lanatus Cla008944 I
Cla016442 Citrullus lanatus Cla016442 I
Cla021878 Citrullus lanatus Cla021878 I
Cucsa.255130 Cucumis sativus Cucsa.255130 I
Cucsa.313240 Cucumis sativus Cucsa.313240 I
Cucsa.321760 Cucumis sativus Cucsa.321760 I
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I
F775_21953 Aegilops tauschii F775_21953 I
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I
GLYMA11G34285 Glycine max GLYMA11G34285 I
GLYMA12G35930 Glycine max GLYMA12G35930 I
GLYMA13G34450 Glycine max GLYMA13G34450 I
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I
GRMZM2G000126 Zea mays GRMZM2G000126 I
GRMZM2G137736 Zea mays GRMZM2G137736 I
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I
LPERR04G01660 Leersia perrieri LPERR04G01660 I
LPERR05G08090 Leersia perrieri LPERR05G08090 I
Lus10022206.g Linum usitatissimum Lus10022206.g I
MDP0000225209 Malus domestica MDP0000225209 I
MLOC_76482 Hordeum vulgare MLOC_76482 I
MTR_1g070265 Medicago truncatula MTR_1g070265 I
OB02G10110 Oryza brachyantha OB02G10110 I
OB04G12040 Oryza brachyantha OB04G12040 I
OB05G18710 Oryza brachyantha OB05G18710 I
OBART04G02370 Oryza barthii OBART04G02370 I
OBART05G10090 Oryza barthii OBART05G10090 I
OBART11G23770 Oryza barthii OBART11G23770 I
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I
OLONG_005038 Oryza longistaminata OLONG_005038 I
OLONG_022667 Oryza longistaminata OLONG_022667 I
OLONG_023754 Oryza longistaminata OLONG_023754 I
OMERI04G02610 Oryza meridionalis OMERI04G02610 I
OMERI07G13080 Oryza meridionalis OMERI07G13080 I
ONIVA04G01910 Oryza nivara ONIVA04G01910 I
ONIVA06G26970 Oryza nivara ONIVA06G26970 I
ONIVA11G23290 Oryza nivara ONIVA11G23290 I
OPUNC05G08760 Oryza punctata OPUNC05G08760 I
OPUNC11G05640 Oryza punctata OPUNC11G05640 I
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I
OS05G0286100 Oryza sativa OS05G0286100 I
OS11G0707300 Oryza sativa OS11G0707300 I
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I
Pavir.J31403 Panicum virgatum Pavir.J31403 I
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I
Pm002649 Prunus mume Pm002649 N
Pm009420 Prunus mume Pm009420 I
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I
RBE Arabidopsis thaliana AT5G06070 D
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I
Sb06g001730 Sorghum bicolor Sb06g001730 I
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I
Si011797m.g Setaria italica Si011797m.g I
Si019050m.g Setaria italica Si019050m.g I
Si024070m.g Setaria italica Si024070m.g I
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I
SUP Arabidopsis thaliana AT3G23130 I
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I
TCM_021875 Theobroma cacao TCM_021875 I
TCM_021876 Theobroma cacao TCM_021876 N
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I
TRIUR3_03721 Triticum urartu TRIUR3_03721 I
TRIUR3_04794 Triticum urartu TRIUR3_04794 I
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I
ZFP11 Arabidopsis thaliana AT2G42410 I