PGSC0003DMG400009072 (Solanum tuberosum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 PGSC0003DMG400009072 T323939_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400023432 Sigma 70 282 354

Links

Other Sigma 70 family TFs
Other Solanum tuberosum TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006532 Ricinus communis 30169.m006532 N 0.899
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.870
Bo7g097160 Brassica oleracea Bo7g097160 N 0.843
Bo9g013770 Brassica oleracea Bo9g013770 N 0.900
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.914
Bra009735 Brassica rapa Bra009735 N 0.843
Bra026466 Brassica rapa Bra026466 N 0.900
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.914
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.914
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.826
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.886
Ca_03953 Cicer arietinum Ca_03953 N 0.957
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.913
Cla004302 Citrullus lanatus Cla004302 N 0.899
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.899
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.913
F775_08366 Aegilops tauschii F775_08366 N 0.710
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.900
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.900
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.886
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.826
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.800
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.913
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.812
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.870
MDP0000831937 Malus domestica MDP0000831937 N 0.886
mgf001401m Mimulus guttatus mgf001401m N 0.913
mgf006107m Mimulus guttatus mgf006107m N 0.900
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.710
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.870
OB05G35020 Oryza brachyantha OB05G35020 N 0.714
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.913
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.714
PK06897.1 Cannabis sativa PK06897.1 N 0.942
Pm019782 Prunus mume Pm019782 N 0.871
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.884
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.929
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.857
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.870
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.870
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.700
Si021904m.g Setaria italica Si021904m.g N 0.714
SIGE Arabidopsis thaliana AT5G24120 N 0.900
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.900
SIGE Vitis vinifera VIT_16s0050g02520 N 0.899
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.971
TCM_015349 Theobroma cacao TCM_015349 N 0.899
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.900
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.710
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.710