chr1.CM0017.250.nc (Lotus japonicus)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 chr1.CM0017.250.nc T324278_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0017.250.nc Sigma 70 300 370

Links

Other Sigma 70 family TFs
Other Lotus japonicus TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30148.m001412 Ricinus communis 30148.m001412 N 1.000
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.944
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.972
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.704
Bo5g009070 Brassica oleracea Bo5g009070 N 0.944
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.972
Bra018617 Brassica rapa Bra018617 N 0.944
Bra030732 Brassica rapa Bra030732 N 0.972
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.972
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.972
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.986
Ca_04693 Cicer arietinum Ca_04693 N 0.915
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.986
Cla007091 Citrullus lanatus Cla007091 N 1.000
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.986
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.704
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.775
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.986
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 1.000
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 1.000
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.944
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.901
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.986
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.930
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.901
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.704
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.718
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.859
Lus10013642.g Linum usitatissimum Lus10013642.g N 0.718
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.859
MDP0000157652 Malus domestica MDP0000157652 N 0.972
mgf015824m Mimulus guttatus mgf015824m N 0.986
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.930
OB11G19800 Oryza brachyantha OB11G19800 N 0.704
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.704
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.704
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.986
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.704
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.704
OS11G0448400 Oryza sativa OS11G0448400 N 0.704
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.704
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.714
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.704
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.944
PK16345.1 Cannabis sativa PK16345.1 N 1.000
Pm025497 Prunus mume Pm025497 N 0.986
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.958
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.958
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.986
SapurV1A.0671s0070 Salix purpurea SapurV1A.0671s0070 N 0.718
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.972
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.986
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.704
Si026193m.g Setaria italica Si026193m.g N 0.704
SIGB Vitis vinifera VIT_15s0024g00640 N 0.986
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.972
SIGB Arabidopsis thaliana AT1G08540 N 0.972
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.958
TCM_025741 Theobroma cacao TCM_025741 N 1.000
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.972