ENSLACG00000002764 (Latimeria chalumnae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSLACG00000002764 T328220_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.741 1.000
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.680 0.768
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.678 0.797
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.468 0.594
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.468 0.594
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.440 0.333
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.440 0.333
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.440 0.333
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.440 0.333
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.440 0.333
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.440 0.536
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.434 0.580
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000003086 Sox 1039 1107

Links

Other Sox family TFs
Other Latimeria chalumnae TFs

477 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G49560 Brachypodium distachyon BRADI1G49560 I 0.000
BRADI1G49570 Brachypodium distachyon BRADI1G49570 I 0.000
BRADI2G60340 Brachypodium distachyon BRADI2G60340 I 0.000
BRADI3G57360 Brachypodium distachyon BRADI3G57360 I 0.000
BRADI4G35580 Brachypodium distachyon BRADI4G35580 I 0.000
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I 0.000
BRADI4G35620 Brachypodium distachyon BRADI4G35620 I 0.000
BRADI4G35630 Brachypodium distachyon BRADI4G35630 I 0.000
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.000
DREB1A Oryza sativa OS09G0522200 D 0.000
DREB1A Oryza indica BGIOSGA029415 I 0.000
DREB1H Oryza indica BGIOSGA029416 I 0.000
DREB1H Oryza sativa OS09G0522100 I 0.000
F775_27111 Aegilops tauschii F775_27111 I 0.000
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.000
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.000
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.000
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.000
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.000
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.000
MLOC_74460 Hordeum vulgare MLOC_74460 I 0.000
OBART09G16810 Oryza barthii OBART09G16810 I 0.000
OBART09G16830 Oryza barthii OBART09G16830 I 0.000
OGLUM09G17420 Oryza glumaepatula OGLUM09G17420 I 0.000
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.000
OMERI09G12480 Oryza meridionalis OMERI09G12480 I 0.000
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.000
ONIVA09G17890 Oryza nivara ONIVA09G17890 I 0.000
ONIVA09G17900 Oryza nivara ONIVA09G17900 I 0.000
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.000
OPUNC09G15280 Oryza punctata OPUNC09G15280 I 0.000
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.000
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.000
ORGLA09G0133100 Oryza glaberrima ORGLA09G0133100 I 0.000
ORUFI09G18200 Oryza rufipogon ORUFI09G18200 I 0.000
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.000
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I 0.000
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I 0.000
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I 0.000
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.000
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.000
Pavir.J03893 Panicum virgatum Pavir.J03893 I 0.000
Pavir.J27101 Panicum virgatum Pavir.J27101 I 0.000
Sb02g030300 Sorghum bicolor Sb02g030300 I 0.000
Sb02g030310 Sorghum bicolor Sb02g030310 I 0.000
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.000
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.000
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.000
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.000
Si030869m.g Setaria italica Si030869m.g I 0.000
Si030998m.g Setaria italica Si030998m.g I 0.000
Si031001m.g Setaria italica Si031001m.g I 0.000
Traes_5BL_60510E4A7 Triticum aestivum Traes_5BL_60510E4A7 I 0.000
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.000