GA16961 (Drosophila pseudoobscura)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 FBgn0076975 T329539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.735 0.971
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.519 0.609
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.519 0.609
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.486 0.594
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.468 0.493
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.446 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0273074 Sox 301 369

Links

Other Sox family TFs
Other Drosophila pseudoobscura TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004381 Aedes aegypti AAEL004381 I 0.441
AAEL011161 Aedes aegypti AAEL011161 I 0.647
AALB003439 Anopheles albimanus AALB003439 I 0.441
Aan_R014485 Calypte anna Aan_R014485 I 0.519
AARA001217 Anopheles arabiensis AARA001217 I 0.441
AARA009897 Anopheles arabiensis AARA009897 I 0.485
ACEP13490 Atta cephalotes ACEP13490 I 0.573
ACEP18843 Atta cephalotes ACEP18843 I 0.446
ACHR004909 Anopheles christyi ACHR004909 I 0.485
ACHR006446 Anopheles christyi ACHR006446 I 0.441
ACOM034716 Anopheles coluzzii ACOM034716 I 0.485
ACUA015009 Anopheles culicifacies ACUA015009 I 0.441
ACYPI004663 Acyrthosiphon pisum ACYPI004663 I 0.453
ADAC008993 Anopheles darlingi ADAC008993 I 0.441
ADAC009062 Anopheles darlingi ADAC009062 I 0.429
ADIR003322 Anopheles dirus ADIR003322 I 0.441
ADIR003385 Anopheles dirus ADIR003385 I 0.494
AEPI004245 Anopheles epiroticus AEPI004245 I 0.485
AEPI005675 Anopheles epiroticus AEPI005675 I 0.441
AFAF009600 Anopheles farauti AFAF009600 I 0.441
AFAF016820 Anopheles farauti AFAF016820 I 0.475
Afo_R006638 Aptenodytes forsteri Afo_R006638 I 0.519
AFUN003674 Anopheles funestus AFUN003674 I 0.510
AFUN006011 Anopheles funestus AFUN006011 I 0.441
AGAP003896 Anopheles gambiae AGAP003896 I 0.485
AGAP003897 Anopheles gambiae AGAP003897 I 0.485
AGAP013411 Anopheles gambiae AGAP013411 I 0.441
Alligator_sinensis_CCG005631.1 Alligator sinensis Alligator_sinensis_CCG005631.1 I 0.446
Alligator_sinensis_CCG019960.1 Alligator sinensis Alligator_sinensis_CCG019960.1 I 0.519
AMAM016153 Anopheles maculatus AMAM016153 I 0.526
AMAM017484 Anopheles maculatus AMAM017484 I 0.441
AMEC010127 Anopheles melas AMEC010127 I 0.441
AMEC018835 Anopheles melas AMEC018835 I 0.420
AMEM005678 Anopheles merus AMEM005678 I 0.441
AMEM012787 Anopheles merus AMEM012787 I 0.417
AMIN000258 Anopheles minimus AMIN000258 I 0.525
AMIN003810 Anopheles minimus AMIN003810 I 0.441
ANCCAN_00149 Ancylostoma caninum ANCCAN_00149 I 0.468
ANCCEY_04123 Ancylostoma ceylanicum ANCCEY_04123 I 0.468
ANCDUO_05529 Ancylostoma duodenale ANCDUO_05529 I 0.468
AQUA002577 Anopheles quadriannulatus AQUA002577 I 0.485
AQUA008168 Anopheles quadriannulatus AQUA008168 I 0.441
ASIM_0000334601 Anisakis simplex ASIM_0000334601 I 0.468
ASTEI00261 Anopheles stephensi ASTEI00261 I 0.441
ASTEI00827 Anopheles stephensi ASTEI00827 I 0.596
ASTEI11145 Anopheles stephensi ASTEI11145 I 0.578
ASU_10300 Ascaris suum ASU_10300 I 0.468
BBX Anolis carolinensis ENSACAG00000006532 I 0.516
BBX Bos taurus ENSBTAG00000006893 I 0.519
BBX Canis familiaris ENSCAFG00000009867 I 0.519
BBX Callithrix jacchus ENSCJAG00000004843 I 0.519
BBX Cavia porcellus ENSCPOG00000003575 I 0.519
bbx Danio rerio ENSDARG00000012699 I 0.519
BBX Dasypus novemcinctus ENSDNOG00000013923 I 0.519
Bbx Dipodomys ordii ENSDORG00000008169 I 0.519
BBX Equus caballus ENSECAG00000023413 I 0.519
BBX Erinaceus europaeus ENSEEUG00000014092 I 0.519
BBX Echinops telfairi ENSETEG00000005122 I 0.519
BBX Felis catus ENSFCAG00000007296 I 0.519
BBX Homo sapiens ENSG00000114439 D 0.519
bbx Gasterosteus aculeatus ENSGACG00000020111 I 0.512
BBX Gorilla gorilla ENSGGOG00000028441 I 0.519
BBX Loxodonta africana ENSLAFG00000006362 I 0.512
BBX Meleagris gallopavo ENSMGAG00000014384 I 0.519
BBX Myotis lucifugus ENSMLUG00000007351 I 0.519
BBX Macaca mulatta ENSMMUG00000008787 I 0.519
BBX Monodelphis domestica ENSMODG00000001748 I 0.519
Bbx Mus musculus ENSMUSG00000022641 D 0.486
BBX Ornithorhynchus anatinus ENSOANG00000007497 I 0.519
BBX Oryctolagus cuniculus ENSOCUG00000001686 I 0.519
BBX Otolemur garnettii ENSOGAG00000008056 I 0.519
BBX Ochotona princeps ENSOPRG00000017013 I 0.519
bbx Oryzias latipes ENSORLG00000005486 I 0.512
BBX Procavia capensis ENSPCAG00000013443 I 0.519
BBX Pan troglodytes ENSPTRG00000015187 I 0.519
BBX Pteropus vampyrus ENSPVAG00000010534 I 0.519
Bbx Rattus norvegicus ENSRNOG00000001971 I 0.486
BBX Sus scrofa ENSSSCG00000011943 I 0.519
bbx Tetraodon nigroviridis ENSTNIG00000008596 I 0.519
bbx Takifugu rubripes ENSTRUG00000003077 I 0.479
BBX Tursiops truncatus ENSTTRG00000013182 I 0.519
BBX Vicugna pacos ENSVPAG00000007818 I 0.519
bbx Drosophila melanogaster FBgn0024251 D 0.735
bbx.L Xenopus laevis XB-GENE-981431 I 0.519
BGIBMGA008274 Bombyx mori BGIBMGA008274 I 0.690
BGIBMGA010263 Bombyx mori BGIBMGA010263 I 0.436
BGLB001462 Biomphalaria glabrata BGLB001462 I 0.446
BGLB009093 Biomphalaria glabrata BGLB009093 I 0.579
Bm5934 Brugia malayi Bm5934 I 0.468
Brh_R008020 Buceros rhinoceros Brh_R008020 I 0.516
B_00914 Schistosoma haematobium B_00914 I 0.472
CapteG223458 Capitella teleta CapteG223458 I 0.567
CapteG39110 Capitella teleta CapteG39110 I 0.567
CapteG39126 Capitella teleta CapteG39126 I 0.446
CBN17413 Caenorhabditis brenneri CBN17413 I 0.468
Cflo_01544--XP_624175.2_APIME Camponotus floridanus Cflo_01544--XP_624175.2_APIME I 0.446
Cflo_04908--XP_624175.2_APIME Camponotus floridanus Cflo_04908--XP_624175.2_APIME I 0.641
CGI_10015746 Crassostrea gigas CGI_10015746 I 0.440
CGI_10018417 Crassostrea gigas CGI_10018417 I 0.561
CIC Canis familiaris ENSCAFG00000004858 I 0.446
CIC Callithrix jacchus ENSCJAG00000012847 I 0.446
CIC Dasypus novemcinctus ENSDNOG00000047657 I 0.446
Cic Dipodomys ordii ENSDORG00000008822 I 0.446
CIC Equus caballus ENSECAG00000011342 I 0.446
CIC Echinops telfairi ENSETEG00000017271 I 0.446
CIC Homo sapiens ENSG00000079432 I 0.446
CIC Gorilla gorilla ENSGGOG00000000192 I 0.446
Cic Mus musculus ENSMUSG00000005442 D 0.446
CIC Otolemur garnettii ENSOGAG00000003964 I 0.446
CIC Procavia capensis ENSPCAG00000017001 I 0.446
CIC Pan troglodytes ENSPTRG00000011051 I 0.446
CIC Pteropus vampyrus ENSPVAG00000016806 I 0.446
Cic Rattus norvegicus ENSRNOG00000056118 I 0.446
CIC Sus scrofa ENSSSCG00000003030 I 0.446
CIC Tupaia belangeri ENSTBEG00000009044 I 0.446
CIC Tetraodon nigroviridis ENSTNIG00000003521 I 0.446
CIC Takifugu rubripes ENSTRUG00000007193 I 0.446
CIC Tursiops truncatus ENSTTRG00000013873 I 0.446
cic Xenopus tropicalis XB-GENE-6467430 I 0.446
cica Danio rerio ENSDARG00000071150 I 0.446
cica Oryzias latipes ENSORLG00000007091 I 0.446
cicb Gasterosteus aculeatus ENSGACG00000009452 I 0.446
cicb Oryzias latipes ENSORLG00000013259 I 0.446
CJA07419 Caenorhabditis japonica CJA07419 I 0.468
CLEC003268 Cimex lectularius CLEC003268 I 0.440
Cmyd_10001800 Chelonia mydas Cmyd_10001800 I 0.446
Cmyd_10015225 Chelonia mydas Cmyd_10015225 I 0.519
CPIJ005582 Culex quinquefasciatus CPIJ005582 I 0.647
CPIJ012202 Culex quinquefasciatus CPIJ012202 I 0.441
CpipJ_CPIJ005582 Culex pipiens CpipJ_CPIJ005582 I 0.647
CpipJ_CPIJ012202 Culex pipiens CpipJ_CPIJ012202 I 0.441
CRE24068 Caenorhabditis remanei CRE24068 I 0.436
csin104163 Clonorchis sinensis csin104163 I 0.442
D917_02434 Trichinella nativa D917_02434 I 0.440
D918_06270 Trichuris suis D918_06270 I 0.440
ENSAMEG00000002574 Ailuropoda melanoleuca ENSAMEG00000002574 I 0.519
ENSAMXG00000014362 Astyanax mexicanus ENSAMXG00000014362 I 0.446
ENSAMXG00000017656 Astyanax mexicanus ENSAMXG00000017656 I 0.512
ENSAMXG00000018358 Astyanax mexicanus ENSAMXG00000018358 I 0.446
ENSAPLG00000005336 Anas platyrhynchos ENSAPLG00000005336 I 0.519
ENSBTAG00000019785 Bos taurus ENSBTAG00000019785 I 0.446
ENSBTAP00000009058-D1 Bos grunniens ENSBTAP00000009058-D1 I 0.519
ENSCPOG00000004391 Cavia porcellus ENSCPOG00000004391 I 0.446
ENSCSAG00000006313 Chlorocebus sabaeus ENSCSAG00000006313 I 0.519
ENSFALG00000006478 Ficedula albicollis ENSFALG00000006478 I 0.516
ENSFCAG00000012737 Felis catus ENSFCAG00000012737 I 0.446
ENSGMOG00000005167 Gadus morhua ENSGMOG00000005167 I 0.446
ENSGMOG00000015829 Gadus morhua ENSGMOG00000015829 I 0.512
ENSLACG00000001134 Latimeria chalumnae ENSLACG00000001134 I 0.519
ENSLACG00000002764 Latimeria chalumnae ENSLACG00000002764 I 0.446
ENSLOCG00000005165 Lepisosteus oculatus ENSLOCG00000005165 I 0.419
ENSMEUG00000016625 Macropus eugenii ENSMEUG00000016625 I 0.446
ENSMICG00000015176 Microcebus murinus ENSMICG00000015176 I 0.446
ENSMLUG00000016650 Myotis lucifugus ENSMLUG00000016650 I 0.446
ENSMMUG00000012174 Macaca mulatta ENSMMUG00000012174 I 0.446
ENSMMUP00000011518 Macaca fascicularis ENSMMUP00000011518 I 0.519
ENSMPUG00000007557 Mustela putorius furo ENSMPUG00000007557 I 0.446
ENSMPUG00000009907 Mustela putorius furo ENSMPUG00000009907 I 0.519
ENSNLEG00000003524 Nomascus leucogenys ENSNLEG00000003524 I 0.519
ENSNLEG00000010614 Nomascus leucogenys ENSNLEG00000010614 I 0.446
ENSOARG00000007985 Ovis aries ENSOARG00000007985 I 0.446
ENSOARG00000018829 Ovis aries ENSOARG00000018829 I 0.519
ENSOCUG00000006458 Oryctolagus cuniculus ENSOCUG00000006458 I 0.446
ENSONIG00000004775 Oreochromis niloticus ENSONIG00000004775 I 0.510
ENSONIG00000004979 Oreochromis niloticus ENSONIG00000004979 I 0.446
ENSONIG00000013108 Oreochromis niloticus ENSONIG00000013108 I 0.446
ENSP00000160740 Macaca fascicularis ENSP00000160740 I 0.446
ENSP00000160740-D1 Bos grunniens ENSP00000160740-D1 I 0.446
ENSPANG00000009039 Papio anubis ENSPANG00000009039 I 0.446
ENSPANG00000018335 Papio anubis ENSPANG00000018335 I 0.519
ENSPFOG00000000116 Poecilia formosa ENSPFOG00000000116 I 0.446
ENSPFOG00000000813 Poecilia formosa ENSPFOG00000000813 I 0.512
ENSPFOG00000016231 Poecilia formosa ENSPFOG00000016231 I 0.446
ENSPPYG00000010041 Pongo abelii ENSPPYG00000010041 I 0.446
ENSPPYG00000013578 Pongo abelii ENSPPYG00000013578 I 0.519
ENSPSIG00000015872 Pelodiscus sinensis ENSPSIG00000015872 I 0.519
ENSSHAG00000003009 Sarcophilus harrisii ENSSHAG00000003009 I 0.519
ENSSTOG00000000852 Ictidomys tridecemlineatus ENSSTOG00000000852 I 0.446
ENSTGUG00000013611 Taeniopygia guttata ENSTGUG00000013611 I 0.516
ENSTSYG00000000857 Tarsius syrichta ENSTSYG00000000857 I 0.519
ENSXMAG00000009457 Xiphophorus maculatus ENSXMAG00000009457 I 0.512
EVEC_0000011601 Enterobius vermicularis EVEC_0000011601 I 0.440
GB43462 Apis mellifera GB43462 I 0.446
GB48450 Apis mellifera GB48450 I 0.641
GE17925 Drosophila yakuba FBgn0235361 I 0.735
gei-3 Caenorhabditis elegans WBGene00001560 D 0.468
GF20922 Drosophila ananassae FBgn0097927 I 0.741
Gfo_R002593 Geospiza fortis Gfo_R002593 I 0.516
GG19727 Drosophila erecta FBgn0111928 I 0.735
GI21541 Drosophila mojavensis FBgn0144271 I 0.741
GJ16014 Drosophila virilis FBgn0203199 I 0.741
GK25081 Drosophila willistoni FBgn0227040 I 0.741
GL20955 Drosophila persimilis FBgn0158550 I 0.494
GM23082 Drosophila sechellia FBgn0177950 I 0.735
gw.448.64.1 Branchiostoma floridae gw.448.64.1 I 0.446
gw.46.292.1 Branchiostoma floridae gw.46.292.1 I 0.446
Hba_18941 Heterorhabditis bacteriophora Hba_18941 I 0.468
HHAL000065-PA Halyomorpha halys HHAL000065-PA I 0.446
HMEL012996 Heliconius melpomene HMEL012996 I 0.690
Hsal_01854--XP_624175.2_APIME Harpegnathos saltator Hsal_01854--XP_624175.2_APIME I 0.680
Hsal_08911--XP_624175.2_APIME Harpegnathos saltator Hsal_08911--XP_624175.2_APIME I 0.446
ISCW010061 Ixodes scapularis ISCW010061 I 0.681
KGM_16790 Danaus plexippus KGM_16790 I 0.630
KGM_16941 Danaus plexippus KGM_16941 I 0.436
L596_g5739 Steinernema carpocapsae L596_g5739 I 0.468
L798_02329 Zootermopsis nevadensis L798_02329 I 0.682
L798_08623 Zootermopsis nevadensis L798_08623 I 0.440
L889_g11174 Steinernema feltiae L889_g11174 I 0.468
L892_g3879 Steinernema scapterisci L892_g3879 I 0.468
L893_g26751 Steinernema glaseri L893_g26751 I 0.468
L898_g8837 Steinernema monticolum L898_g8837 I 0.468
LCUP006498 Lucilia cuprina LCUP006498 I 0.726
LDEC000948 Leptinotarsa decemlineata LDEC000948 I 0.569
LLOJ007756 Lutzomyia longipalpis LLOJ007756 I 0.441
LOAG_17202 Loa loa LOAG_17202 I 0.468
LotgiG89909 Lottia gigantea LotgiG89909 I 0.561
MCINX015089 Melitaea cinxia MCINX015089 I 0.436
MDOA012813 Musca domestica MDOA012813 I 0.733
Myotis_brandtii_BBX_10016000 Myotis brandtii Myotis_brandtii_BBX_10016000 I 0.519
Myotis_brandtii_Cic_10007129 Myotis brandtii Myotis_brandtii_Cic_10007129 I 0.446
nAv.1.0.1.g00032 Acanthocheilonema viteae nAv.1.0.1.g00032 I 0.472
nDi.2.2.2.g01012 Dirofilaria immitis nDi.2.2.2.g01012 I 0.468
nLs.2.1.2.g07996 Litomosoides sigmodontis nLs.2.1.2.g07996 I 0.468
nOo.2.0.1.g00287 Onchocerca ochengi nOo.2.0.1.g00287 I 0.468
NV10910 Nasonia vitripennis NV10910 I 0.440
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.485
Ocbimv22037932m.g Octopus bimaculoides Ocbimv22037932m.g I 0.441
OESDEN_00065 Oesophagostomum dentatum OESDEN_00065 I 0.468
OFLC_0001331401 Onchocerca flexuosa OFLC_0001331401 I 0.468
Ogr10275 Ophisaurus gracilis Ogr10275 I 0.446
Ogr11041 Ophisaurus gracilis Ogr11041 I 0.516
PHUM079880 Pediculus humanus PHUM079880 I 0.446
PHUM230960 Pediculus humanus PHUM230960 I 0.487
POSPLDRAFT_104619 Postia placenta POSPLDRAFT_104619 I 0.439
POSPLDRAFT_98507 Postia placenta POSPLDRAFT_98507 I 0.439
PTRK_0000169700 Parastrongyloides trichosuri PTRK_0000169700 I 0.426
Pvit_02469 Pogona vitticeps Pvit_02469 I 0.516
Pvit_02876 Pogona vitticeps Pvit_02876 I 0.446
RPRC001090 Rhodnius prolixus RPRC001090 I 0.446
Sakowv30039572m.g Saccoglossus kowalevskii Sakowv30039572m.g I 0.545
Sakowv30042695m.g Saccoglossus kowalevskii Sakowv30042695m.g I 0.446
SBAD_0000026401 Soboliphyme baturini SBAD_0000026401 I 0.450
scaffold4-EXSNAP2012.129 Pristionchus exspectatus scaffold4-EXSNAP2012.129 I 0.434
SCUD_0001673101 Schistosoma curassoni SCUD_0001673101 I 0.472
SINV12425 Solenopsis invicta SINV12425 I 0.641
Sjc_0093980 Schistosoma japonicum Sjc_0093980 I 0.472
SMAR009315 Strigamia maritima SMAR009315 I 0.446
SMAR012744 Strigamia maritima SMAR012744 I 0.579
Smp_142600 Schistosoma mansoni Smp_142600 I 0.466
SMU15002098 Schmidtea mediterranea SMU15002098 I 0.440
SMUV_0001072601 Syphacia muris SMUV_0001072601 I 0.440
SPAL_0001296500 Strongyloides papillosus SPAL_0001296500 I 0.426
SPU_025292 Strongylocentrotus purpuratus SPU_025292 I 0.446
SSTP_0000494800 Strongyloides stercoralis SSTP_0000494800 I 0.426
SVE_0052600 Strongyloides venezuelensis SVE_0052600 I 0.426
SVUK_0000932601 Strongylus vulgaris SVUK_0000932601 I 0.472
T265_01499 Opisthorchis viverrini T265_01499 I 0.442
Tal_R013114 Tyto alba Tal_R013114 I 0.519
TC004697 Tribolium castaneum TC004697 I 0.446
TC007499 Tribolium castaneum TC007499 I 0.609
TCLT_0000608401 Thelazia callipaeda TCLT_0000608401 I 0.468
tetur21g00740 Tetranychus urticae tetur21g00740 I 0.444
tetur23g01950 Tetranychus urticae tetur23g01950 I 0.709
TMUE_s0223001200 Trichuris muris TMUE_s0223001200 I 0.440
TTRE_0000098801 Trichuris trichiura TTRE_0000098801 I 0.440
WBGene00241539 Onchocerca volvulus WBGene00241539 I 0.468
WUBG_04884 Wuchereria bancrofti WUBG_04884 I 0.468
XP_002932333 Xenopus tropicalis XP_002932333 I 0.519
YQE_03282 Dendroctonus ponderosae YQE_03282 I 0.440
YQE_06837 Dendroctonus ponderosae YQE_06837 I 0.569