YQE_06837 (Dendroctonus ponderosae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 YQE_06837 T333345_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.569 0.623
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.516 0.652
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.483 0.638
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.483 0.638
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.418 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN76658 Sox 125 193

Links

Other Sox family TFs
Other Dendroctonus ponderosae TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011161 Aedes aegypti AAEL011161 I 0.591
AALB008976 Anopheles albimanus AALB008976 N 0.466
Aan_R014485 Calypte anna Aan_R014485 I 0.483
AARA009897 Anopheles arabiensis AARA009897 I 0.506
AATE006341 Anopheles atroparvus AATE006341 I 0.464
ACEP13490 Atta cephalotes ACEP13490 I 0.572
ACHR004909 Anopheles christyi ACHR004909 I 0.498
ACOM034716 Anopheles coluzzii ACOM034716 I 0.506
ADAC009062 Anopheles darlingi ADAC009062 I 0.496
ADIR003385 Anopheles dirus ADIR003385 I 0.504
AEPI004245 Anopheles epiroticus AEPI004245 I 0.506
AFAF016820 Anopheles farauti AFAF016820 I 0.472
Afo_R006638 Aptenodytes forsteri Afo_R006638 I 0.483
AFUN003674 Anopheles funestus AFUN003674 I 0.498
AGAP003896 Anopheles gambiae AGAP003896 I 0.506
AGAP003897 Anopheles gambiae AGAP003897 I 0.506
Alligator_sinensis_CCG019960.1 Alligator sinensis Alligator_sinensis_CCG019960.1 I 0.483
AMAM016153 Anopheles maculatus AMAM016153 I 0.531
AMIN000258 Anopheles minimus AMIN000258 I 0.505
AQUA002577 Anopheles quadriannulatus AQUA002577 I 0.506
ASTEI00827 Anopheles stephensi ASTEI00827 I 0.537
ASTEI11145 Anopheles stephensi ASTEI11145 I 0.537
BBX Anolis carolinensis ENSACAG00000006532 I 0.480
BBX Bos taurus ENSBTAG00000006893 I 0.483
BBX Canis familiaris ENSCAFG00000009867 I 0.483
BBX Callithrix jacchus ENSCJAG00000004843 I 0.483
BBX Cavia porcellus ENSCPOG00000003575 I 0.483
bbx Danio rerio ENSDARG00000012699 I 0.483
BBX Dasypus novemcinctus ENSDNOG00000013923 I 0.483
Bbx Dipodomys ordii ENSDORG00000008169 I 0.483
BBX Equus caballus ENSECAG00000023413 I 0.483
BBX Erinaceus europaeus ENSEEUG00000014092 I 0.483
BBX Echinops telfairi ENSETEG00000005122 I 0.483
BBX Felis catus ENSFCAG00000007296 I 0.483
BBX Homo sapiens ENSG00000114439 D 0.483
bbx Gasterosteus aculeatus ENSGACG00000020111 I 0.483
BBX Gorilla gorilla ENSGGOG00000028441 I 0.483
BBX Loxodonta africana ENSLAFG00000006362 I 0.483
BBX Meleagris gallopavo ENSMGAG00000014384 I 0.483
BBX Myotis lucifugus ENSMLUG00000007351 I 0.483
BBX Macaca mulatta ENSMMUG00000008787 I 0.483
BBX Monodelphis domestica ENSMODG00000001748 I 0.483
Bbx Mus musculus ENSMUSG00000022641 D 0.516
BBX Ornithorhynchus anatinus ENSOANG00000007497 I 0.483
BBX Oryctolagus cuniculus ENSOCUG00000001686 I 0.483
BBX Otolemur garnettii ENSOGAG00000008056 I 0.483
BBX Ochotona princeps ENSOPRG00000017013 I 0.483
bbx Oryzias latipes ENSORLG00000005486 I 0.483
BBX Procavia capensis ENSPCAG00000013443 I 0.483
BBX Pan troglodytes ENSPTRG00000015187 I 0.483
BBX Pteropus vampyrus ENSPVAG00000010534 I 0.483
Bbx Rattus norvegicus ENSRNOG00000001971 I 0.516
BBX Sus scrofa ENSSSCG00000011943 I 0.483
bbx Tetraodon nigroviridis ENSTNIG00000008596 I 0.483
bbx Takifugu rubripes ENSTRUG00000003077 I 0.516
BBX Tursiops truncatus ENSTTRG00000013182 I 0.483
BBX Vicugna pacos ENSVPAG00000007818 I 0.483
bbx Drosophila melanogaster FBgn0024251 D 0.569
bbx.L Xenopus laevis XB-GENE-981431 I 0.483
BGIBMGA008274 Bombyx mori BGIBMGA008274 I 0.605
BGLB009093 Biomphalaria glabrata BGLB009093 I 0.531
Brh_R008020 Buceros rhinoceros Brh_R008020 I 0.480
CapteG223458 Capitella teleta CapteG223458 I 0.550
CapteG39110 Capitella teleta CapteG39110 I 0.550
CBG00068 Caenorhabditis briggsae CBG00068 I 0.418
Cflo_04908--XP_624175.2_APIME Camponotus floridanus Cflo_04908--XP_624175.2_APIME I 0.640
CGI_10018417 Crassostrea gigas CGI_10018417 I 0.550
cic Drosophila melanogaster FBgn0262582 D 0.418
Cmyd_10015225 Chelonia mydas Cmyd_10015225 I 0.483
CPIJ005582 Culex quinquefasciatus CPIJ005582 I 0.591
CpipJ_CPIJ005582 Culex pipiens CpipJ_CPIJ005582 I 0.591
ENSAMEG00000002574 Ailuropoda melanoleuca ENSAMEG00000002574 I 0.483
ENSAMXG00000017656 Astyanax mexicanus ENSAMXG00000017656 I 0.483
ENSAPLG00000005336 Anas platyrhynchos ENSAPLG00000005336 I 0.483
ENSBTAP00000009058-D1 Bos grunniens ENSBTAP00000009058-D1 I 0.483
ENSCSAG00000006313 Chlorocebus sabaeus ENSCSAG00000006313 I 0.483
ENSFALG00000006478 Ficedula albicollis ENSFALG00000006478 I 0.480
ENSGMOG00000015829 Gadus morhua ENSGMOG00000015829 I 0.483
ENSLACG00000001134 Latimeria chalumnae ENSLACG00000001134 I 0.483
ENSLOCG00000005165 Lepisosteus oculatus ENSLOCG00000005165 I 0.416
ENSMMUP00000011518 Macaca fascicularis ENSMMUP00000011518 I 0.483
ENSMPUG00000009907 Mustela putorius furo ENSMPUG00000009907 I 0.483
ENSNLEG00000003524 Nomascus leucogenys ENSNLEG00000003524 I 0.483
ENSOARG00000018829 Ovis aries ENSOARG00000018829 I 0.483
ENSONIG00000004775 Oreochromis niloticus ENSONIG00000004775 I 0.480
ENSPANG00000018335 Papio anubis ENSPANG00000018335 I 0.483
ENSPFOG00000000813 Poecilia formosa ENSPFOG00000000813 I 0.483
ENSPPYG00000013578 Pongo abelii ENSPPYG00000013578 I 0.483
ENSPSIG00000015872 Pelodiscus sinensis ENSPSIG00000015872 I 0.483
ENSSHAG00000003009 Sarcophilus harrisii ENSSHAG00000003009 I 0.483
ENSTGUG00000013611 Taeniopygia guttata ENSTGUG00000013611 I 0.480
ENSTSYG00000000857 Tarsius syrichta ENSTSYG00000000857 I 0.483
ENSXMAG00000009457 Xiphophorus maculatus ENSXMAG00000009457 I 0.483
GA16961 Drosophila pseudoobscura FBgn0076975 I 0.569
GB48450 Apis mellifera GB48450 I 0.640
GD19345 Drosophila simulans FBgn0190847 I 0.418
GE17925 Drosophila yakuba FBgn0235361 I 0.569
GE25659 Drosophila yakuba FBgn0242721 I 0.418
GF17645 Drosophila ananassae FBgn0094663 I 0.418
GF20922 Drosophila ananassae FBgn0097927 I 0.569
Gfo_R002593 Geospiza fortis Gfo_R002593 I 0.480
GG19727 Drosophila erecta FBgn0111928 I 0.569
GG23823 Drosophila erecta FBgn0115962 I 0.418
GH23608 Drosophila grimshawi FBgn0131065 I 0.432
GI21541 Drosophila mojavensis FBgn0144271 I 0.569
GJ16014 Drosophila virilis FBgn0203199 I 0.569
GJ23448 Drosophila virilis FBgn0210547 I 0.425
GK10919 Drosophila willistoni FBgn0212930 I 0.418
GK25081 Drosophila willistoni FBgn0227040 I 0.569
GM23082 Drosophila sechellia FBgn0177950 I 0.569
GM23104 Drosophila sechellia FBgn0177972 I 0.418
HMEL012996 Heliconius melpomene HMEL012996 I 0.605
Hsal_01854--XP_624175.2_APIME Harpegnathos saltator Hsal_01854--XP_624175.2_APIME I 0.608
ISCW010061 Ixodes scapularis ISCW010061 I 0.601
KGM_16790 Danaus plexippus KGM_16790 I 0.528
L798_02329 Zootermopsis nevadensis L798_02329 I 0.594
LCUP006498 Lucilia cuprina LCUP006498 I 0.577
LCUP009387 Lucilia cuprina LCUP009387 I 0.425
LDEC000948 Leptinotarsa decemlineata LDEC000948 I 0.735
LotgiG89909 Lottia gigantea LotgiG89909 I 0.550
MDOA004531 Musca domestica MDOA004531 I 0.425
MDOA012813 Musca domestica MDOA012813 I 0.577
Myotis_brandtii_BBX_10016000 Myotis brandtii Myotis_brandtii_BBX_10016000 I 0.483
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.437
Ogr11041 Ophisaurus gracilis Ogr11041 I 0.480
PHUM230960 Pediculus humanus PHUM230960 I 0.477
Pvit_02469 Pogona vitticeps Pvit_02469 I 0.480
RSKR_0000077800 Rhabditophanes kr3021 RSKR_0000077800 I 0.418
Sakowv30039572m.g Saccoglossus kowalevskii Sakowv30039572m.g I 0.457
scaffold4-EXSNAP2012.129 Pristionchus exspectatus scaffold4-EXSNAP2012.129 I 0.431
SINV12425 Solenopsis invicta SINV12425 I 0.640
SMAR012744 Strigamia maritima SMAR012744 I 0.507
Tal_R013114 Tyto alba Tal_R013114 I 0.483
TC007499 Tribolium castaneum TC007499 I 0.701
tetur23g01950 Tetranychus urticae tetur23g01950 I 0.564
XP_002932333 Xenopus tropicalis XP_002932333 I 0.483