tbx15 (Takifugu rubripes)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSTRUG00000003945 T340544_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TBX15
M03554_2.00 		Homo sapiens
AGGTGTGAAATTCACACCT
AGGTGTGAATTTCACACCT		 SELEX
Jolma et al.(2013)
TBX15_1 		0.920 0.962
TBX15
M03555_2.00 		Homo sapiens
AGGTGTGA
TCACACCT		 SELEX
Jolma et al.(2013)
TBX15_2 		0.920 0.962
TBX15
M05795_2.00 		Homo sapiens
NRSGTGTBAN
NTVACACSYN		 SELEX
Yin et al.(2017)
TBX15_eDBD_HT-SELEX 		0.920 0.962
TBX15
M11378_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX15_01 		0.920 0.962
TBX15
M11379_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX15_02 		0.920 0.962
TBX15
M05796_2.00 		Homo sapiens
NDSGYGTBAN
NTVACRCSHN		 SELEX
Yin et al.(2017)
TBX15_eDBD_Methyl-HT-SELEX 		0.751 0.925
TBX18
M05797_2.00 		Homo sapiens
DDAGGTGTGARV
BYTCACACCTHH		 SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX 		0.901 0.929
TBX18
M11380_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX18_01 		0.901 0.929
TBX18
M05798_2.00 		Homo sapiens
NDAGGYGTGAAN
NTTCACRCCTHN		 SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX 		0.901 0.929
TBX22
M11383_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX22_01 		0.810 0.731
mid
M03994_2.00 		Drosophila melanogaster
DAGGTGTKAN
NTMACACCTH		 SELEX
Nitta et al.(2015)
mid_1 		0.761 0.593
Tbx20
M00835_2.00 		Mus musculus
NRRGTGTBAN
NTVACACYYN		 PBM
Weirauch et al.(2013)
pTH3777 		0.738 0.643
TBX20
M03565_2.00 		Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_1 		0.738 0.643
TBX20
M03566_2.00 		Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT		 SELEX
Jolma et al.(2013)
TBX20_2 		0.738 0.643
TBX20
M03567_2.00 		Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN		 SELEX
Jolma et al.(2013)
TBX20_3 		0.738 0.643
TBX20
M03568_2.00 		Homo sapiens
DAGGTGTGAWR
YWTCACACCTH		 SELEX
Jolma et al.(2013)
TBX20_4 		0.738 0.643
TBX20
M03569_2.00 		Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_5 		0.738 0.643
TBX20
M05813_2.00 		Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1 		0.738 0.643
TBX20
M05814_2.00 		Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2 		0.738 0.643
TBX20
M05817_2.00 		Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1 		0.738 0.643
TBX20
M05818_2.00 		Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2 		0.738 0.643
Tbx20
M09430_2.00 		Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN		 Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C 		0.738 0.643
Tbx20
M09650_2.00 		Mus musculus
SCTGTCADCASN
NSTGHTGACAGS		 Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636 		0.738 0.643
TBX20
M11385_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX20_05 		0.738 0.643
TBX20
M05815_2.00 		Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1 		0.738 0.643
TBX20
M05816_2.00 		Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2 		0.738 0.643
TBX20
M05819_2.00 		Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1 		0.738 0.643
TBX20
M05820_2.00 		Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2 		0.738 0.643
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000009337 T-box 155 347
ENSTRUP00000009338 T-box 154 346
ENSTRUP00000009339 T-box 131 323
ENSTRUP00000009340 T-box 107 299
ENSTRUP00000009341 T-box 118 310
ENSTRUP00000009342 T-box 107 290

Links

Other T-box family TFs
Other Takifugu rubripes TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30131.m007145 Ricinus communis 30131.m007145 N
Al_scaffold_0007_76 Arabidopsis lyrata Al_scaffold_0007_76 I
Aquca_006_00159 Aquilegia coerulea Aquca_006_00159 I
Aquca_007_00377 Aquilegia coerulea Aquca_007_00377 N
AT4G38900 Arabidopsis thaliana AT4G38900 I
BGIOSGA011761 Oryza indica BGIOSGA011761 N
BGIOSGA029105 Oryza indica BGIOSGA029105 I
BGIOSGA029106 Oryza indica BGIOSGA029106 I
Bo3g149620 Brassica oleracea Bo3g149620 I
Bo5g007170 Brassica oleracea Bo5g007170 I
Bo7g119550 Brassica oleracea Bo7g119550 I
Bo8g005940 Brassica oleracea Bo8g005940 I
Bostr.25219s0353 Boechera stricta Bostr.25219s0353 I
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I
Bra010722 Brassica rapa Bra010722 I
Bra015471 Brassica rapa Bra015471 I
Bra030637 Brassica rapa Bra030637 I
Bra033582 Brassica rapa Bra033582 I
BRADI1G76690 Brachypodium distachyon BRADI1G76690 N
BRADI3G31890 Brachypodium distachyon BRADI3G31890 N
BRADI3G41980 Brachypodium distachyon BRADI3G41980 I
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I
Cagra.1383s0070 Capsella grandiflora Cagra.1383s0070 N
Cagra.1671s0236 Capsella grandiflora Cagra.1671s0236 I
Carubv10004500m.g Capsella rubella Carubv10004500m.g N
Carubv10008993m.g Capsella rubella Carubv10008993m.g I
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I
cassava32399.m1 Manihot esculenta cassava32399.m1 I
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I
cassava43164.valid.m1 Manihot esculenta cassava43164.valid.m1 I
Ca_02692 Cicer arietinum Ca_02692 I
Ca_10755 Cicer arietinum Ca_10755 N
Ca_27693 Cicer arietinum Ca_27693 I
chr3.CM0106.340.nd Lotus japonicus chr3.CM0106.340.nd I
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I
Cla016124 Citrullus lanatus Cla016124 I
Cla016125 Citrullus lanatus Cla016125 I
Cucsa.062530 Cucumis sativus Cucsa.062530 I
Cucsa.251880 Cucumis sativus Cucsa.251880 I
Cucsa.382180 Cucumis sativus Cucsa.382180 I
Cucsa.382190 Cucumis sativus Cucsa.382190 I
estExt_gwp_gw1.C_200078 Physcomitrella patens estExt_gwp_gw1.C_200078 I
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I
evm.TU.supercontig_81.160 Carica papaya evm.TU.supercontig_81.160 I
e_gw1.20.99.1 Physcomitrella patens e_gw1.20.99.1 I
F775_32059 Aegilops tauschii F775_32059 I
F775_33214 Aegilops tauschii F775_33214 N
fgenesh1_pg.scaffold_3000202 Physcomitrella patens fgenesh1_pg.scaffold_3000202 N
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I
gene23487-v1.0-hybrid Fragaria vesca gene23487-v1.0-hybrid I
GLYMA04G02850 Glycine max GLYMA04G02850 I
GLYMA11G11791 Glycine max GLYMA11G11791 I
GLYMA11G13510 Glycine max GLYMA11G13510 I
GLYMA12G04050 Glycine max GLYMA12G04050 I
GLYMA12G05520 Glycine max GLYMA12G05520 I
GLYMA13G42030 Glycine max GLYMA13G42030 I
GLYMA15G03350 Glycine max GLYMA15G03350 I
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I
Gorai.005G015900 Gossypium raimondii Gorai.005G015900 I
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I
Gorai.006G229500 Gossypium raimondii Gorai.006G229500 I
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I
GRMZM2G332294 Zea mays GRMZM2G332294 I
GRMZM2G353553 Zea mays GRMZM2G353553 N
GRMZM2G428184 Zea mays GRMZM2G428184 N
GRMZM2G473274 Zea mays GRMZM2G473274 N
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I
GSMUA_Achr1G08090_001 Musa acuminata GSMUA_Achr1G08090_001 N
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I
GSMUA_Achr5G20200_001 Musa acuminata GSMUA_Achr5G20200_001 N
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I
GSMUA_Achr8G12090_001 Musa acuminata GSMUA_Achr8G12090_001 I
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I
LPERR03G02000 Leersia perrieri LPERR03G02000 N
LPERR04G13880 Leersia perrieri LPERR04G13880 N
LPERR10G12670 Leersia perrieri LPERR10G12670 N
Lus10012391.g Linum usitatissimum Lus10012391.g N
Lus10018061.g Linum usitatissimum Lus10018061.g I
Lus10019376.g Linum usitatissimum Lus10019376.g I
Lus10042057.g Linum usitatissimum Lus10042057.g I
mgf000302m Mimulus guttatus mgf000302m I
mgf004912m Mimulus guttatus mgf004912m I
MLOC_10725 Hordeum vulgare MLOC_10725 N
MLOC_64362 Hordeum vulgare MLOC_64362 I
MLOC_64781 Hordeum vulgare MLOC_64781 I
MLOC_66865 Hordeum vulgare MLOC_66865 N
MLOC_75510 Hordeum vulgare MLOC_75510 I
MTR_1g023690 Medicago truncatula MTR_1g023690 N
MTR_4g072090 Medicago truncatula MTR_4g072090 I
OB03G12130 Oryza brachyantha OB03G12130 N
OB09G23080 Oryza brachyantha OB09G23080 I
OB10G23730 Oryza brachyantha OB10G23730 N
OBART03G02190 Oryza barthii OBART03G02190 N
OGLUM03G02140 Oryza glumaepatula OGLUM03G02140 N
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I
OLONG_011520 Oryza longistaminata OLONG_011520 N
OLONG_016151 Oryza longistaminata OLONG_016151 N
OMERI03G02030 Oryza meridionalis OMERI03G02030 N
OMERI09G12160 Oryza meridionalis OMERI09G12160 I
ONIVA03G01800 Oryza nivara ONIVA03G01800 N
OPUNC03G01930 Oryza punctata OPUNC03G01930 N
OPUNC10G15060 Oryza punctata OPUNC10G15060 N
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I
orange1.1g014471m.g Citrus sinensis orange1.1g014471m.g N
ORGLA03G0019600 Oryza glaberrima ORGLA03G0019600 N
ORUFI03G01930 Oryza rufipogon ORUFI03G01930 N
OS03G0127500 Oryza sativa OS03G0127500 N
OS10G0531900 Oryza sativa OS10G0531900 N
Pavir.Ia02926 Panicum virgatum Pavir.Ia02926 N
Pavir.Ib00162 Panicum virgatum Pavir.Ib00162 N
Pavir.J19159 Panicum virgatum Pavir.J19159 N
Pavir.J22781 Panicum virgatum Pavir.J22781 N
Pavir.J29906 Panicum virgatum Pavir.J29906 N
PDK_20s1312701g003 Phoenix dactylifera PDK_20s1312701g003 I
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I
PK00843.1 Cannabis sativa PK00843.1 I
PK20942.1 Cannabis sativa PK20942.1 D
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I
POPTR_0017s05610 Populus trichocarpa POPTR_0017s05610 I
RF2A Oryza sativa OS09G0516200 I
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I
Sb01g030770 Sorghum bicolor Sb01g030770 N
Sb01g048710 Sorghum bicolor Sb01g048710 N
Sb06g021350 Sorghum bicolor Sb06g021350 I
Sb07g025490 Sorghum bicolor Sb07g025490 I
scaffold_100594.1 Arabidopsis lyrata scaffold_100594.1 I
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I
Si015587m.g Setaria italica Si015587m.g I
Si035841m.g Setaria italica Si035841m.g N
Si039566m.g Setaria italica Si039566m.g N
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I
Solyc06g053350.2 Solanum lycopersicum Solyc06g053350.2 I
TCM_006766 Theobroma cacao TCM_006766 I
TCM_019998 Theobroma cacao TCM_019998 I
TCM_034172 Theobroma cacao TCM_034172 N
Thhalv10007692m.g Eutrema salsugineum Thhalv10007692m.g I
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I
Traes_1AL_2AC682D6D Triticum aestivum Traes_1AL_2AC682D6D N
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I
Traes_7BS_7B68879A9 Triticum aestivum Traes_7BS_7B68879A9 I
Traes_7DS_3463CAE33 Triticum aestivum Traes_7DS_3463CAE33 I
TRIUR3_15472 Triticum urartu TRIUR3_15472 N
TRIUR3_20880 Triticum urartu TRIUR3_20880 N
TRIUR3_23538 Triticum urartu TRIUR3_23538 N
TRIUR3_31242 Triticum urartu TRIUR3_31242 I
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I
VIT_05s0102g01120 Vitis vinifera VIT_05s0102g01120 I