29822.m003403 (Ricinus communis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 29822.m003403 T343093_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.738 0.738
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.738 0.738
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.738 0.738
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.738 0.738
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.738 0.738
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.738 0.738
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.738 0.738
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.738 0.738
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.738 0.738
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.738 0.738
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.732 0.732
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.732 0.732
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.732 0.732
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29822.m003403 TBP 14 96
29822.m003403 TBP 104 188

Links

Other TBP family TFs
Other Ricinus communis TFs

680 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003436 Aedes aegypti AAEL003436 I
Aan_R007097 Calypte anna Aan_R007097 I
Aan_R009520 Calypte anna Aan_R009520 I
Afo_R002906 Aptenodytes forsteri Afo_R002906 I
Afo_R003215 Aptenodytes forsteri Afo_R003215 I
AGAP011437 Anopheles gambiae AGAP011437 I
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I
Alligator_sinensis_CCG006299.1 Alligator sinensis Alligator_sinensis_CCG006299.1 I
ASU_01180 Ascaris suum ASU_01180 I
Bm6296 Brugia malayi Bm6296 I
CapteG93575 Capitella teleta CapteG93575 I
CBN13270 Caenorhabditis brenneri CBN13270 I
CGI_10023990 Crassostrea gigas CGI_10023990 I
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I
D917_06660 Trichinella nativa D917_06660 I
DAPPUDRAFT_22285 Daphnia pulex DAPPUDRAFT_22285 I
EBF1 Bos taurus ENSBTAG00000037508 I
EBF1 Canis familiaris ENSCAFG00000017318 I
EBF1 Callithrix jacchus ENSCJAG00000019016 I
EBF1 Cavia porcellus ENSCPOG00000026184 I
EBF1 Equus caballus ENSECAG00000007964 I
EBF1 Echinops telfairi ENSETEG00000011711 I
EBF1 Felis catus ENSFCAG00000008547 I
EBF1 Homo sapiens ENSG00000164330 D
EBF1 Gasterosteus aculeatus ENSGACG00000018450 I
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I
EBF1 Gallus gallus ENSGALG00000003699 I
EBF1 Gorilla gorilla ENSGGOG00000000033 I
EBF1 Loxodonta africana ENSLAFG00000017522 I
EBF1 Meleagris gallopavo ENSMGAG00000004896 I
EBF1 Microcebus murinus ENSMICG00000010036 I
EBF1 Monodelphis domestica ENSMODG00000008198 I
Ebf1 Mus musculus ENSMUSG00000057098 D
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I
EBF1 Oryzias latipes ENSORLG00000002342 I
EBF1 Oryzias latipes ENSORLG00000007471 I
EBF1 Procavia capensis ENSPCAG00000013495 I
EBF1 Pan troglodytes ENSPTRG00000017477 I
Ebf1 Rattus norvegicus ENSRNOG00000028845 I
EBF1 Taeniopygia guttata ENSTGUG00000000593 I
EBF1 Takifugu rubripes ENSTRUG00000009320 I
EBF1 Takifugu rubripes ENSTRUG00000013805 I
EBF1 Tursiops truncatus ENSTTRG00000009929 I
ebf1a Danio rerio ENSDARG00000099849 I
ebf1b Danio rerio ENSDARG00000069196 I
EBF2 Bos taurus ENSBTAG00000040390 I
EBF2 Canis familiaris ENSCAFG00000008918 I
EBF2 Callithrix jacchus ENSCJAG00000019921 I
EBF2 Cavia porcellus ENSCPOG00000001463 I
ebf2 Danio rerio ENSDARG00000042525 I
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I
EBF2 Equus caballus ENSECAG00000014179 I
EBF2 Felis catus ENSFCAG00000003607 I
EBF2 Homo sapiens ENSG00000221818 D
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I
EBF2 Gallus gallus ENSGALG00000000242 I
EBF2 Gorilla gorilla ENSGGOG00000001585 I
EBF2 Loxodonta africana ENSLAFG00000022465 I
EBF2 Meleagris gallopavo ENSMGAG00000000791 I
EBF2 Myotis lucifugus ENSMLUG00000011509 I
EBF2 Monodelphis domestica ENSMODG00000016702 I
Ebf2 Mus musculus ENSMUSG00000022053 D
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I
EBF2 Otolemur garnettii ENSOGAG00000010783 I
ebf2 Oryzias latipes ENSORLG00000006408 I
EBF2 Pan troglodytes ENSPTRG00000003058 I
EBF2 Pteropus vampyrus ENSPVAG00000024254 I
Ebf2 Rattus norvegicus ENSRNOG00000011548 I
EBF2 Sus scrofa ENSSSCG00000009655 I
EBF2 Taeniopygia guttata ENSTGUG00000004267 I
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I
ebf2 Takifugu rubripes ENSTRUG00000011528 I
ebf2 Xenopus tropicalis XB-GENE-971136 I
ebf2.L Xenopus laevis XB-GENE-6252857 I
ebf2.S Xenopus laevis XB-GENE-971141 I
EBF3 Anolis carolinensis ENSACAG00000008590 I
EBF3 Cavia porcellus ENSCPOG00000005096 I
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I
EBF3 Echinops telfairi ENSETEG00000014060 I
EBF3 Homo sapiens ENSG00000108001 D
EBF3 Macaca mulatta ENSMMUG00000011447 I
Ebf3 Mus musculus ENSMUSG00000010476 I
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I
EBF3 Oryctolagus cuniculus ENSOCUG00000008915 I
EBF3 Otolemur garnettii ENSOGAG00000007572 I
Ebf3 Rattus norvegicus ENSRNOG00000016102 I
EBF3 Tupaia belangeri ENSTBEG00000005858 I
EBF3 Taeniopygia guttata ENSTGUG00000011600 I
EBF3 Tursiops truncatus ENSTTRG00000014010 I
ebf3 Xenopus tropicalis XB-GENE-962543 I
ebf3.L Xenopus laevis XB-GENE-962547 I
ebf3a Danio rerio ENSDARG00000100244 I
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I
ebf3a Oryzias latipes ENSORLG00000005870 I
ebf3a Takifugu rubripes ENSTRUG00000005721 I
ebf3b Danio rerio ENSDARG00000091287 I
EBF4 Bos taurus ENSBTAG00000037757 I
EBF4 Canis familiaris ENSCAFG00000006631 I
EBF4 Callithrix jacchus ENSCJAG00000021027 I
EBF4 Cavia porcellus ENSCPOG00000004862 I
EBF4 Dasypus novemcinctus ENSDNOG00000049548 I
EBF4 Equus caballus ENSECAG00000010003 I
EBF4 Felis catus ENSFCAG00000014453 I
EBF4 Homo sapiens ENSG00000088881 D
EBF4 Gasterosteus aculeatus ENSGACG00000016862 I
EBF4 Gorilla gorilla ENSGGOG00000015503 I
EBF4 Myotis lucifugus ENSMLUG00000023832 I
EBF4 Macaca mulatta ENSMMUG00000021331 I
EBF4 Monodelphis domestica ENSMODG00000005256 I
Ebf4 Mus musculus ENSMUSG00000053552 D
EBF4 Oryctolagus cuniculus ENSOCUG00000023917 I
EBF4 Otolemur garnettii ENSOGAG00000004688 I
EBF4 Ochotona princeps ENSOPRG00000013703 I
EBF4 Oryzias latipes ENSORLG00000020414 I
EBF4 Procavia capensis ENSPCAG00000011947 I
EBF4 Pteropus vampyrus ENSPVAG00000006830 I
Ebf4 Rattus norvegicus ENSRNOG00000007408 I
EBF4 Sus scrofa ENSSSCG00000007171 I
EBF4 Tursiops truncatus ENSTTRG00000003459 I
ebf4 Xenopus tropicalis XB-GENE-6030626 I
EFV50386 Trichinella spiralis EFV50386 I
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I
ENSAMEG00000003291 Ailuropoda melanoleuca ENSAMEG00000003291 I
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I
ENSAMXG00000021198 Astyanax mexicanus ENSAMXG00000021198 I
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I
ENSAPLG00000015476 Anas platyrhynchos ENSAPLG00000015476 I
ENSBTAP00000042518-D1 Bos grunniens ENSBTAP00000042518-D1 I
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I
ENSCSAG00000004432 Chlorocebus sabaeus ENSCSAG00000004432 I
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I
ENSFALG00000008502 Ficedula albicollis ENSFALG00000008502 I
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I
ENSLOCG00000015225 Lepisosteus oculatus ENSLOCG00000015225 I
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I
ENSNLEG00000001518 Nomascus leucogenys ENSNLEG00000001518 I
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I
ENSOARG00000005967 Ovis aries ENSOARG00000005967 I
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I
ENSONIG00000013342 Oreochromis niloticus ENSONIG00000013342 I
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I
ENSP00000347463 Macaca fascicularis ENSP00000347463 I
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I
ENSP00000405003 Macaca fascicularis ENSP00000405003 I
ENSPANG00000007524 Papio anubis ENSPANG00000007524 I
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I
ENSPFOG00000007531 Poecilia formosa ENSPFOG00000007531 I
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I
ENSPPYG00000015995 Pongo abelii ENSPPYG00000015995 I
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I
ENSSSCG00000010757 Sus scrofa ENSSSCG00000010757 I
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I
ENSXMAG00000000489 Xiphophorus maculatus ENSXMAG00000000489 I
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I
GA24435 Drosophila pseudoobscura FBgn0245832 I
GB42304 Apis mellifera GB42304 I
GE12286 Drosophila yakuba FBgn0230042 I
GF11778 Drosophila ananassae FBgn0088818 I
Gfo_R004859 Geospiza fortis Gfo_R004859 I
GG22397 Drosophila erecta FBgn0114569 I
GH20479 Drosophila grimshawi FBgn0127942 I
GI21022 Drosophila mojavensis FBgn0143754 I
GJ21945 Drosophila virilis FBgn0209060 I
GK23295 Drosophila willistoni FBgn0225257 I
GL10656 Drosophila persimilis FBgn0148266 I
GM20182 Drosophila sechellia FBgn0175065 I
HelroG112029 Helobdella robusta HelroG112029 I
HNAJ_0001308901 Hymenolepis nana HNAJ_0001308901 I
KGM_09934 Danaus plexippus KGM_09934 I
kn Drosophila melanogaster FBgn0001319 D
L596_g20342 Steinernema carpocapsae L596_g20342 I
L798_15574 Zootermopsis nevadensis L798_15574 I
L889_g1820 Steinernema feltiae L889_g1820 I
L893_g31120 Steinernema glaseri L893_g31120 I
L898_g8304 Steinernema monticolum L898_g8304 I
LCUP013861 Lucilia cuprina LCUP013861 I
LOAG_18199 Loa loa LOAG_18199 I
LotgiG225788 Lottia gigantea LotgiG225788 I
MCINX016126 Melitaea cinxia MCINX016126 I
MDOA011385 Musca domestica MDOA011385 I
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I
Myotis_brandtii_Ebf3_10024822 Myotis brandtii Myotis_brandtii_Ebf3_10024822 I
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I
nAv.1.0.1.g03521 Acanthocheilonema viteae nAv.1.0.1.g03521 I
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I
nLs.2.1.2.g08363 Litomosoides sigmodontis nLs.2.1.2.g08363 I
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I
NV10306 Nasonia vitripennis NV10306 I
PHUM119360 Pediculus humanus PHUM119360 I
PTRK_0001642500 Parastrongyloides trichosuri PTRK_0001642500 I
Pvit_12046 Pogona vitticeps Pvit_12046 I
Pvit_16838 Pogona vitticeps Pvit_16838 I
RSKR_0000832900 Rhabditophanes kr3021 RSKR_0000832900 I
Sakowv30011033m.g Saccoglossus kowalevskii Sakowv30011033m.g I
SBAD_0000456201 Soboliphyme baturini SBAD_0000456201 I
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I
SMAR000842 Strigamia maritima SMAR000842 I
SMU15024001 Schmidtea mediterranea SMU15024001 I
SNAPOd2T00017027001 Oikopleura dioica SNAPOd2T00017027001 I
SPAL_0001132500 Strongyloides papillosus SPAL_0001132500 I
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I
SSTP_0000472000 Strongyloides stercoralis SSTP_0000472000 I
SVE_0119400 Strongyloides venezuelensis SVE_0119400 I
TC001270 Tribolium castaneum TC001270 I
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I
unc-3 Caenorhabditis elegans WBGene00006743 I
WBGene00240610 Onchocerca volvulus WBGene00240610 I
WUBG_00630 Wuchereria bancrofti WUBG_00630 I