Bo3g004670 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo3g004670 T343732_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.944 0.568
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.940 0.568
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.939 0.568
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.939 0.568
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.924 0.459
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.921 0.504
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.921 0.504
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.861 0.396
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.842 0.369
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.822 0.360
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.822 0.360
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.822 0.360
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.822 0.351
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g004670.1 TCP 37 242

Links

Other TCP family TFs
Other Brassica oleracea TFs

311 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG01352 Caenorhabditis briggsae CBG01352 I 0.000
CBG01353 Caenorhabditis briggsae CBG01353 I 0.000
CBG01357 Caenorhabditis briggsae CBG01357 N 0.000
CBG01359 Caenorhabditis briggsae CBG01359 N 0.000
CBG04928 Caenorhabditis briggsae CBG04928 I 0.000
CBG06387 Caenorhabditis briggsae CBG06387 I 0.000
CBG17898 Caenorhabditis briggsae CBG17898 I 0.000
CBG19144 Caenorhabditis briggsae CBG19144 I 0.000
CBN03087 Caenorhabditis brenneri CBN03087 I 0.000
CBN17580 Caenorhabditis brenneri CBN17580 N 0.000
CRE09222 Caenorhabditis remanei CRE09222 I 0.000
CRE09224 Caenorhabditis remanei CRE09224 N 0.000
CRE09225 Caenorhabditis remanei CRE09225 N 0.000
CRE09227 Caenorhabditis remanei CRE09227 N 0.000
CRE14845 Caenorhabditis remanei CRE14845 I 0.000
nhr-117 Caenorhabditis elegans WBGene00003707 I 0.000
nhr-123 Caenorhabditis elegans WBGene00003713 I 0.000
nhr-130 Caenorhabditis elegans WBGene00003720 I 0.000
nhr-182 Caenorhabditis elegans WBGene00018265 D 0.000
nhr-201 Caenorhabditis elegans WBGene00019741 I 0.000
nhr-202 Caenorhabditis elegans WBGene00019742 I 0.000
nhr-203 Caenorhabditis elegans WBGene00019743 N 0.000
nhr-55 Caenorhabditis elegans WBGene00003645 I 0.000
nhr-98 Caenorhabditis elegans WBGene00003688 I 0.000