CRF1 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT4G11140 T000484_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.818 0.840
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.810 0.840
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.798 0.840
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.798 0.840
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.798 0.840
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.774 0.780
ERF069
M01604_2.00 		Arabidopsis thaliana
NNGCCGNNN
NNNCGGCNN		 PBM
Weirauch et al.(2014)
pTH7550 		0.774 0.820
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.767 0.780
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.732 0.740
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.732 0.740
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.732 0.740
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.721 0.700
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.715 0.720
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.712 0.760
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.710 0.680
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.705 0.700
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.705 0.700
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.705 0.700
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.704 0.700
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.702 0.680
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.702 0.660
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.702 0.660
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.702 0.660
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.702 0.680
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.698 0.680
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.698 0.680
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.697 0.720
Q84J59_MAIZE
M09717_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BD1_01 		0.697 0.600
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.697 0.660
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.697 0.660
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.696 0.680
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.695 0.680
ERF086
M06663_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
PUCHI_col_a 		0.693 0.620
ERF086
M06664_2.00 		Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN		 Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a 		0.693 0.620
ERF10
M06562_2.00 		Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN		 Dap-seq
OMalley et al.(2016)
ERF10_col_a 		0.692 0.640
ERF10
M06563_2.00 		Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF10_colamp_a 		0.692 0.640
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.690 0.700
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.689 0.720
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.689 0.720
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.689 0.720
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.689 0.660
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.689 0.660
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.687 0.680
LEP
M06661_2.00 		Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN		 Dap-seq
OMalley et al.(2016)
LEP_col_a 		0.686 0.640
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.685 0.660
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.685 0.660
0100010458
M01644_2.00 		Ostreococcus tauri
MGCCGSCR
YGSCGGCK		 PBM
Weirauch et al.(2014)
pTH9447 		0.684 0.660
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.683 0.680
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.680 0.660
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.680 0.660
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.680 0.700
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.680 0.700
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.680 0.700
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.677 0.640
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.677 0.640
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.677 0.640
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.677 0.640
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.677 0.640
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G11140.1 AP2 85 136

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

1641 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20859 Aegilops tauschii F775_20859 N
F775_42755 Aegilops tauschii F775_42755 N
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N
AMTR_s00029p00050350 Amborella trichopoda AMTR_s00029p00050350 N
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N
AMTR_s00133p00075670 Amborella trichopoda AMTR_s00133p00075670 N
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I
MYB60 Arabidopsis thaliana AT1G08810 D
MYB3 Arabidopsis thaliana AT1G22640 D
MYB95 Arabidopsis thaliana AT1G74430 N
ATMYB16 Arabidopsis thaliana AT5G15310 I
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I
Bo00877s020 Brassica oleracea Bo00877s020 N
Bo4g198650 Brassica oleracea Bo4g198650 N
Bo8g104180 Brassica oleracea Bo8g104180 N
Bra024685 Brassica rapa Bra024685 N
PK00358.1 Cannabis sativa PK00358.1 N
PK18646.1 Cannabis sativa PK18646.1 N
PK21717.1 Cannabis sativa PK21717.1 N
PK22972.1 Cannabis sativa PK22972.1 N
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N
evm.TU.supercontig_18.15 Carica papaya evm.TU.supercontig_18.15 N
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N
Ca_10215 Cicer arietinum Ca_10215 N
Ciclev10023519m.g Citrus clementina Ciclev10023519m.g N
orange1.1g019307m.g Citrus sinensis orange1.1g019307m.g I
Cucsa.051050 Cucumis sativus Cucsa.051050 I
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N
GLYMA0041S00310 Glycine max GLYMA0041S00310 I
GLYMA09G04370 Glycine max GLYMA09G04370 I
GLYMA14G10483 Glycine max GLYMA14G10483 I
GLYMA16G16170 Glycine max GLYMA16G16170 N
Gorai.001G024300 Gossypium raimondii Gorai.001G024300 I
Gorai.001G239000 Gossypium raimondii Gorai.001G239000 I
Gorai.008G086400 Gossypium raimondii Gorai.008G086400 I
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I
MLOC_12474 Hordeum vulgare MLOC_12474 N
MLOC_13019 Hordeum vulgare MLOC_13019 I
MLOC_39554 Hordeum vulgare MLOC_39554 I
MLOC_59184 Hordeum vulgare MLOC_59184 N
MLOC_59663 Hordeum vulgare MLOC_59663 I
MLOC_71332 Hordeum vulgare MLOC_71332 N
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N
chr5.CM0071.390.nd Lotus japonicus chr5.CM0071.390.nd N
CM0385.220.nd Lotus japonicus CM0385.220.nd N
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N
LjSGA_064890.1.1 Lotus japonicus LjSGA_064890.1.1 N
MDP0000158409 Malus domestica MDP0000158409 N
MDP0000413041 Malus domestica MDP0000413041 N
MDP0000793261 Malus domestica MDP0000793261 N
MDP0000879675 Malus domestica MDP0000879675 N
MDP0000911051 Malus domestica MDP0000911051 N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
cassava2662.m1 Manihot esculenta cassava2662.m1 N
cassava45648.m1 Manihot esculenta cassava45648.m1 N
MTR_1g087540 Medicago truncatula MTR_1g087540 N
mg021480m Mimulus guttatus mg021480m N
mgf017705m Mimulus guttatus mgf017705m N
mgf018056m Mimulus guttatus mgf018056m N
mgf020736m Mimulus guttatus mgf020736m N
mgf023771m Mimulus guttatus mgf023771m N
OB06G28240 Oryza brachyantha OB06G28240 N
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N
BGIOSGA010548 Oryza indica BGIOSGA010548 N
OLONG_025203 Oryza longistaminata OLONG_025203 N
OPUNC01G25350 Oryza punctata OPUNC01G25350 N
ORUFI03G21770 Oryza rufipogon ORUFI03G21770 N
OS04G0517100 Oryza sativa OS04G0517100 N
OS05G0350900 Oryza sativa OS05G0350900 N
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
Pavir.Ia03786 Panicum virgatum Pavir.Ia03786 N
Pavir.J25377 Panicum virgatum Pavir.J25377 N
PDK_20s1546421g001 Phoenix dactylifera PDK_20s1546421g001 N
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N
Pm000007 Prunus mume Pm000007 N
Pm015551 Prunus mume Pm015551 N
30128.m008990 Ricinus communis 30128.m008990 N
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I
SapurV1A.0876s0040 Salix purpurea SapurV1A.0876s0040 I
SapurV1A.0890s0050 Salix purpurea SapurV1A.0890s0050 I
SapurV1A.1876s0010 Salix purpurea SapurV1A.1876s0010 N
SapurV1A.3377s0010 Salix purpurea SapurV1A.3377s0010 I
Solyc03g098270.1 Solanum lycopersicum Solyc03g098270.1 N
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N
TCM_041010 Theobroma cacao TCM_041010 I
Traes_1BL_A44464337 Triticum aestivum Traes_1BL_A44464337 N
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N
TRIUR3_33467 Triticum urartu TRIUR3_33467 N
GRMZM2G001223 Zea mays GRMZM2G001223 I
GRMZM2G051528 Zea mays GRMZM2G051528 I