CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GSMUA_AchrUn_randomG16100_001 *(Musa acuminata)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	GSMUA_AchrUn_randomG16100_001	T002515_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.795	0.860
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.795	0.860
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.795	0.860
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.790	0.840
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.785	0.820
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.785	0.820
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.783	0.820
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.783	0.820
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.769	0.820
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.769	0.820
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.766	0.840
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.766	0.840
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.766	0.840
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.749	0.780
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.749	0.780
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.749	0.780
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.735	0.740
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.726	0.780
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.726	0.780
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.726	0.780
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.722	0.720
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.721	0.700
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.717	0.720
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.717	0.720
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.717	0.720
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.716	0.740
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.716	0.740
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.716	0.740
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.716	0.640
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.714	0.660
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.714	0.740
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.713	0.700
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.713	0.700
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.712	0.760
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.709	0.740
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.708	0.680
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.695	0.740
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.695	0.740
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.695	0.740
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.695	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.695	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.695	0.720
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.693	0.660
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.693	0.660
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.693	0.660
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.693	0.700
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.693	0.700
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.691	0.740
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.689	0.740
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.688	0.700
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.687	0.700
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.687	0.700
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.687	0.700
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.687	0.700
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.687	0.700
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.687	0.700
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.687	0.700
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.687	0.780
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.687	0.780
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.687	0.780
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.687	0.780
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.686	0.720
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.683	0.680
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.681	0.680
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.680	0.640
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.679	0.680
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.679	0.680
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.679	0.680
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GSMUA_AchrUn_randomP16100_001	AP2	27	78	TRYRGVRKRPWGRYAAEIRDPAKKCRVWLGTFDTAEEAARAYDAAALRFRGP

Links
Other AP2 family TFs
Other *Musa acuminata* TFs

1877 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL004033	Aedes aegypti	AAEL004033	N
ENSAPLG00000005538	Anas platyrhynchos	ENSAPLG00000005538	I
ANCDUO_24100	Ancylostoma duodenale	ANCDUO_24100	N
ASIM_0000150901	Anisakis simplex	ASIM_0000150901	N
AALB008452	Anopheles albimanus	AALB008452	N
AATE008437	Anopheles atroparvus	AATE008437	N
ACUA026159	Anopheles culicifacies	ACUA026159	N
ACUA001481	Anopheles culicifacies	ACUA001481	I
ADIR006386	Anopheles dirus	ADIR006386	N
AEPI002734	Anopheles epiroticus	AEPI002734	N
AFAF005788	Anopheles farauti	AFAF005788	N
AMAM013696	Anopheles maculatus	AMAM013696	N
AMEC022035	Anopheles melas	AMEC022035	N
AMEM013182	Anopheles merus	AMEM013182	N
AMIN002697	Anopheles minimus	AMIN002697	N
AQUA009532	Anopheles quadriannulatus	AQUA009532	N
ASIS022603	Anopheles sinensis	ASIS022603	N
Afo_R002915	Aptenodytes forsteri	Afo_R002915	N
ASU_03476	Ascaris suum	ASU_03476	I
ACEP17328	Atta cephalotes	ACEP17328	N
BGIBMGA010051	Bombyx mori	BGIBMGA010051	N
Bm5188	Brugia malayi	Bm5188	N
CapteG6193	Capitella teleta	CapteG6193	N
NKX6-1	Choloepus hoffmanni	ENSCHOG00000005454	I
CLEC002616	Cimex lectularius	CLEC002616	N
CpipJ_CPIJ001377	Culex pipiens	CpipJ_CPIJ001377	N
CPIJ001377	Culex quinquefasciatus	CPIJ001377	N
KGM_13904	Danaus plexippus	KGM_13904	N
YQE_09155	Dendroctonus ponderosae	YQE_09155	N
DICVIV_02945	Dictyocaulus viviparus	DICVIV_02945	N
ECPE_0000358001	Echinostoma caproni	ECPE_0000358001	N
EVEC_0000660801	Enterobius vermicularis	EVEC_0000660801	N
ENSECAG00000018325	Equus caballus	ENSECAG00000018325	I
Gfo_R008628	Geospiza fortis	Gfo_R008628	I
HHAL007703-PA	Halyomorpha halys	HHAL007703-PA	N
Hsal_06171--XP_001121097.1_APIME	Harpegnathos saltator	Hsal_06171--XP_001121097.1_APIME	N
ISCW014430	Ixodes scapularis	ISCW014430	N
LDEC017209	Leptinotarsa decemlineata	LDEC017209	N
nLs.2.1.2.g06018	Litomosoides sigmodontis	nLs.2.1.2.g06018	N
LCUP008694	Lucilia cuprina	LCUP008694	N
ENSMEUG00000009353	Macropus eugenii	ENSMEUG00000009353	I
MESCA000156	Megaselia scalaris	MESCA000156	I
MCINX004710	Melitaea cinxia	MCINX004710	N
augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0	N
ENSMICG00000006922	Microcebus murinus	ENSMICG00000006922	I
Myotis_brandtii_NKX6_10030510	Myotis brandtii	Myotis_brandtii_NKX6_10030510	N
Ocbimv22025901m.g	Octopus bimaculoides	Ocbimv22025901m.g	N
OFLC_0001516501	Onchocerca flexuosa	OFLC_0001516501	N
ENSOANG00000006212	Ornithorhynchus anatinus	ENSOANG00000006212	I
ENSOARG00000007317	Ovis aries	ENSOARG00000007317	N
PHUM359870	Pediculus humanus	PHUM359870	N
PPAI007703	Phlebotomus papatasi	PPAI007703	N
ENSPFOG00000002761	Poecilia formosa	ENSPFOG00000002761	I
scaffold37-EXSNAP2012.8	Pristionchus exspectatus	scaffold37-EXSNAP2012.8	N
Ppa-cog-1	Pristionchus pacificus	PPA04716	N
NKX6-2	Procavia capensis	ENSPCAG00000000708	N
PXEA_0000446101	Protopolystoma xenopodis	PXEA_0000446101	N
nRc.2.0.1.g06912	Romanomermis culicivorax	nRc.2.0.1.g06912	N
ENSSHAG00000002937	Sarcophilus harrisii	ENSSHAG00000002937	I
SCUD_0002260901	Schistosoma curassoni	SCUD_0002260901	I
SCUD_0002097601	Schistosoma curassoni	SCUD_0002097601	N
A_02867	Schistosoma haematobium	A_02867	N
Sjc_0024500	Schistosoma japonicum	Sjc_0024500	I
Sjc_0111830	Schistosoma japonicum	Sjc_0111830	N
SMTD_0002181901	Schistosoma mattheei	SMTD_0002181901	I
SROB_0001257001	Schistosoma rodhaini	SROB_0001257001	N
SINV25324	Solenopsis invicta	SINV25324	I
NKX6-1	Sus scrofa	ENSSSCG00000009232	I
SMUV_0000883501	Syphacia muris	SMUV_0000883501	I
TCNE_0001839401	Toxocara canis	TCNE_0001839401	N
D917_08408	Trichinella nativa	D917_08408	N
D917_05078	Trichinella nativa	D917_05078	N
TRE_0000644601	Trichobilharzia regenti	TRE_0000644601	N
WUBG_08661	Wuchereria bancrofti	WUBG_08661	N

GSMUA_AchrUn_randomG16100_001 (Musa acuminata) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1877 Related TFs

GSMUA_AchrUn_randomG16100_001 **(Musa acuminata)
AP2**