CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCM_031608 *(Theobroma cacao)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	TCM_031608	T005644_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.848	0.940
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.848	0.940
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.848	0.940
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.836	0.880
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.836	0.880
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.829	0.880
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.829	0.880
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.822	0.860
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.813	0.900
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.813	0.900
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.813	0.900
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.756	0.840
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.756	0.840
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.756	0.840
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.748	0.800
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.748	0.800
ERF7 M01617_2.00	Arabidopsis thaliana	NGCCGNMNNN	NNNKNCGGCN	PBM Weirauch et al.(2014) pTH7606	0.744	0.780
ERF7 M06620_2.00	Arabidopsis thaliana	YHNHYNYYDYCDCCGCCGYCD	HGRCGGCGGHGRHRRNRDNDR	Dap-seq OMalley et al.(2016) ERF7_col_a	0.744	0.780
ERF7 M06621_2.00	Arabidopsis thaliana	NNNHNNHNHHDSCGCCGCCRH	DYGGCGGCGSHDDNDNNDNNN	Dap-seq OMalley et al.(2016) ERF7_colamp_a	0.744	0.780
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.739	0.740
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.728	0.760
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.727	0.760
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.718	0.760
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.718	0.760
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.718	0.760
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.715	0.700
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.707	0.700
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.707	0.700
PK17878.1 M01099_2.00	Cannabis sativa	CGCCGYCR	YGRCGGCG	PBM Lambert et al.(2019) pTH10133	0.705	0.760
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.703	0.720
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.703	0.720
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.702	0.700
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.702	0.700
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.702	0.700
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.700	0.700
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.700	0.700
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.700	0.700
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.699	0.720
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.699	0.700
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.699	0.700
ERF087 M06573_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYYD	HRRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) AT1G28160_col_a	0.698	0.740
ERF087 M06574_2.00	Arabidopsis thaliana	HDYCKCCGCCGYCR	YGRCGGCGGMGRHD	Dap-seq OMalley et al.(2016) AT1G28160_colamp_a	0.698	0.740
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.695	0.620
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.694	0.700
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.694	0.700
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.693	0.740
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.691	0.660
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.688	0.740
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.688	0.680
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.686	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.686	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.686	0.720
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.686	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.686	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.686	0.680
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.680	0.620
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.678	0.720
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.678	0.720
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.678	0.720
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.678	0.760
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EOY13085	AP2	21	72	IRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFDTAEEAARAYDAAAREFRGA

Links
Other AP2 family TFs
Other *Theobroma cacao* TFs

1700 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL004174	Aedes aegypti	AAEL004174	I
AAEL013504	Aedes aegypti	AAEL013504	I
AALB004781	Anopheles albimanus	AALB004781	I
AARA007626	Anopheles arabiensis	AARA007626	I
AATE019626	Anopheles atroparvus	AATE019626	I
ACHR005948	Anopheles christyi	ACHR005948	I
ACOM024997	Anopheles coluzzii	ACOM024997	I
ACUA013605	Anopheles culicifacies	ACUA013605	I
ADAC005019	Anopheles darlingi	ADAC005019	I
ADIR008855	Anopheles dirus	ADIR008855	I
AEPI008783	Anopheles epiroticus	AEPI008783	I
AFAF003219	Anopheles farauti	AFAF003219	I
AFUN010103	Anopheles funestus	AFUN010103	I
AGAP005896	Anopheles gambiae	AGAP005896	I
AGAP005895	Anopheles gambiae	AGAP005895	I
AMEC016175	Anopheles melas	AMEC016175	I
AMEM015129	Anopheles merus	AMEM015129	I
AMIN011562	Anopheles minimus	AMIN011562	I
AQUA010990	Anopheles quadriannulatus	AQUA010990	I
ASIS012852	Anopheles sinensis	ASIS012852	I
ASTEI02809	Anopheles stephensi	ASTEI02809	I
tbx-2	Caenorhabditis elegans	WBGene00006543	I
CpipJ_CPIJ004922	Culex pipiens	CpipJ_CPIJ004922	I
CPIJ004922	Culex quinquefasciatus	CPIJ004922	I
GF24375	Drosophila ananassae	FBgn0101369	I
GF24374	Drosophila ananassae	FBgn0101368	I
GF10130	Drosophila ananassae	FBgn0087171	I
GG15041	Drosophila erecta	FBgn0107295	I
GG14369	Drosophila erecta	FBgn0106628	I
GH14955	Drosophila grimshawi	FBgn0122430	I
GH16540	Drosophila grimshawi	FBgn0124011	I
GH16541	Drosophila grimshawi	FBgn0124012	I
Doc2	Drosophila melanogaster	FBgn0035956	D
Doc3	Drosophila melanogaster	FBgn0035954	D
Doc1	Drosophila melanogaster	FBgn0028789	I
GI11482	Drosophila mojavensis	FBgn0134242	I
GI13831	Drosophila mojavensis	FBgn0136585	I
GI13829	Drosophila mojavensis	FBgn0136583	I
GL15081	Drosophila persimilis	FBgn0152685	I
GL15034	Drosophila persimilis	FBgn0152638	I
GL15033	Drosophila persimilis	FBgn0152637	I
GA18721	Drosophila pseudoobscura	FBgn0078721	I
GA18682	Drosophila pseudoobscura	FBgn0078682	I
GA18655	Drosophila pseudoobscura	FBgn0078655	I
GM25113	Drosophila sechellia	FBgn0179974	I
GM25112	Drosophila sechellia	FBgn0179973	I
GM24895	Drosophila sechellia	FBgn0179757	I
GD14149	Drosophila simulans	FBgn0185837	I
GD14148	Drosophila simulans	FBgn0185836	I
GJ11695	Drosophila virilis	FBgn0198949	I
GJ11697	Drosophila virilis	FBgn0198951	I
GK12353	Drosophila willistoni	FBgn0214363	I
GK12352	Drosophila willistoni	FBgn0214362	I
GK12279	Drosophila willistoni	FBgn0214289	I
GE21264	Drosophila yakuba	FBgn0238533	I
GE20800	Drosophila yakuba	FBgn0238094	I
GE20799	Drosophila yakuba	FBgn0238093	I
ECANG7_07504	Echinococcus canadensis	ECANG7_07504	I
TBX2	Equus caballus	ENSECAG00000024480	I
ENSGMOG00000012645	Gadus morhua	ENSGMOG00000012645	I
HMEL012563	Heliconius melpomene	HMEL012563	I
HelroG98030	Helobdella robusta	HelroG98030	I
Hba_14542	Heterorhabditis bacteriophora	Hba_14542	I
LCUP005947	Lucilia cuprina	LCUP005947	I
LCUP005945	Lucilia cuprina	LCUP005945	I
LCUP005946	Lucilia cuprina	LCUP005946	I
MESCA005219	Megaselia scalaris	MESCA005219	I
MCOS_0000012101	Mesocestoides corti	MCOS_0000012101	I
TBX3	Monodelphis domestica	ENSMODG00000012059	I
MDOA003812	Musca domestica	MDOA003812	I
MDOA006037	Musca domestica	MDOA006037	I
MDOA015287	Musca domestica	MDOA015287	I
TBX6	Ochotona princeps	ENSOPRG00000009784	I
ENSONIG00000011959	Oreochromis niloticus	ENSONIG00000011959	I

TCM_031608 (Theobroma cacao) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1700 Related TFs

TCM_031608 **(Theobroma cacao)
AP2**