CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ib02259 *(Panicum virgatum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Pavir.Ib02259	T009529_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.829	0.808
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.819	0.788
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.819	0.788
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.819	0.788
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.818	0.788
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.791	0.788
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.791	0.788
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.790	0.788
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.790	0.788
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.790	0.788
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.758	0.692
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.744	0.750
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.743	0.712
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.738	0.731
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.738	0.731
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.738	0.731
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.735	0.673
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.734	0.731
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.734	0.731
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.727	0.769
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.727	0.769
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.727	0.692
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.724	0.731
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.724	0.731
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.723	0.635
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.723	0.712
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.723	0.635
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.719	0.692
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.718	0.712
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.711	0.692
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.711	0.692
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.707	0.712
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.707	0.712
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.707	0.712
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.706	0.635
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.697	0.731
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.695	0.635
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.692	0.635
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.690	0.673
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.685	0.635
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.685	0.635
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.685	0.635
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.684	0.750
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.680	0.615
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.680	0.615
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.679	0.615
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.679	0.673
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.679	0.692
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.679	0.692
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.679	0.692
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.679	0.654
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.678	0.654
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.677	0.635
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.677	0.635
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.677	0.654
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.677	0.654
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.677	0.654
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.677	0.654
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.677	0.654
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.677	0.673
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ib02259.1.p	AP2	150	202	RRYRGVRQRPWGKYAAEIRDPARKGARVWLGTYDTAVEAARAYDRAAFRLRGS

Links
Other AP2 family TFs
Other *Panicum virgatum* TFs

1811 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL004033	Aedes aegypti	AAEL004033	N
ENSAPLG00000005538	Anas platyrhynchos	ENSAPLG00000005538	I
ANCDUO_24100	Ancylostoma duodenale	ANCDUO_24100	N
ASIM_0001695301	Anisakis simplex	ASIM_0001695301	N
AALB008452	Anopheles albimanus	AALB008452	N
AATE008437	Anopheles atroparvus	AATE008437	N
ACUA026159	Anopheles culicifacies	ACUA026159	N
AEPI002734	Anopheles epiroticus	AEPI002734	N
AFAF005788	Anopheles farauti	AFAF005788	N
AMAM013696	Anopheles maculatus	AMAM013696	N
AMEC022035	Anopheles melas	AMEC022035	N
AMEM013182	Anopheles merus	AMEM013182	N
AMIN002697	Anopheles minimus	AMIN002697	N
AQUA009532	Anopheles quadriannulatus	AQUA009532	N
ASIS022603	Anopheles sinensis	ASIS022603	N
Afo_R002915	Aptenodytes forsteri	Afo_R002915	N
ACEP17328	Atta cephalotes	ACEP17328	N
BGIBMGA010051	Bombyx mori	BGIBMGA010051	N
Bm5188	Brugia malayi	Bm5188	N
CapteG6193	Capitella teleta	CapteG6193	N
NKX6-1	Choloepus hoffmanni	ENSCHOG00000005454	I
CLEC002616	Cimex lectularius	CLEC002616	N
CpipJ_CPIJ001377	Culex pipiens	CpipJ_CPIJ001377	N
CPIJ001377	Culex quinquefasciatus	CPIJ001377	N
KGM_13904	Danaus plexippus	KGM_13904	N
YQE_09155	Dendroctonus ponderosae	YQE_09155	N
DICVIV_02945	Dictyocaulus viviparus	DICVIV_02945	N
ECPE_0000358001	Echinostoma caproni	ECPE_0000358001	N
EVEC_0000660801	Enterobius vermicularis	EVEC_0000660801	N
ENSECAG00000018325	Equus caballus	ENSECAG00000018325	I
Gfo_R008628	Geospiza fortis	Gfo_R008628	I
HHAL007703-PA	Halyomorpha halys	HHAL007703-PA	N
Hsal_06171--XP_001121097.1_APIME	Harpegnathos saltator	Hsal_06171--XP_001121097.1_APIME	N
ISCW014430	Ixodes scapularis	ISCW014430	N
LDEC017209	Leptinotarsa decemlineata	LDEC017209	N
nLs.2.1.2.g06018	Litomosoides sigmodontis	nLs.2.1.2.g06018	N
LCUP008694	Lucilia cuprina	LCUP008694	N
ENSMEUG00000009353	Macropus eugenii	ENSMEUG00000009353	I
MESCA000156	Megaselia scalaris	MESCA000156	I
MCINX004710	Melitaea cinxia	MCINX004710	N
augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf02139-processed-gene-0.0	N
ENSMICG00000006922	Microcebus murinus	ENSMICG00000006922	I
Myotis_brandtii_NKX6_10030510	Myotis brandtii	Myotis_brandtii_NKX6_10030510	N
Ocbimv22025901m.g	Octopus bimaculoides	Ocbimv22025901m.g	N
OFLC_0001516501	Onchocerca flexuosa	OFLC_0001516501	N
ENSOANG00000006212	Ornithorhynchus anatinus	ENSOANG00000006212	I
ENSOARG00000007317	Ovis aries	ENSOARG00000007317	N
PHUM359870	Pediculus humanus	PHUM359870	N
PPAI007703	Phlebotomus papatasi	PPAI007703	N
ENSPFOG00000002761	Poecilia formosa	ENSPFOG00000002761	I
scaffold37-EXSNAP2012.8	Pristionchus exspectatus	scaffold37-EXSNAP2012.8	N
Ppa-cog-1	Pristionchus pacificus	PPA04716	N
NKX6-2	Procavia capensis	ENSPCAG00000000708	N
PXEA_0000446101	Protopolystoma xenopodis	PXEA_0000446101	N
nRc.2.0.1.g06912	Romanomermis culicivorax	nRc.2.0.1.g06912	N
ENSSHAG00000002937	Sarcophilus harrisii	ENSSHAG00000002937	I
SCUD_0002097601	Schistosoma curassoni	SCUD_0002097601	N
A_02867	Schistosoma haematobium	A_02867	N
Sjc_0111830	Schistosoma japonicum	Sjc_0111830	N
SROB_0001257001	Schistosoma rodhaini	SROB_0001257001	N
SINV25324	Solenopsis invicta	SINV25324	I
NKX6-1	Sus scrofa	ENSSSCG00000009232	I
TCNE_0001839401	Toxocara canis	TCNE_0001839401	N
D917_08408	Trichinella nativa	D917_08408	N
D917_05078	Trichinella nativa	D917_05078	N
TRE_0000644601	Trichobilharzia regenti	TRE_0000644601	N
WUBG_08661	Wuchereria bancrofti	WUBG_08661	N

Pavir.Ib02259 (Panicum virgatum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1811 Related TFs

Pavir.Ib02259 **(Panicum virgatum)
AP2**