Pavir.J01078 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J01078 T009539_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.747 0.712
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01078.1.p AP2 153 205

Links

Other AP2 family TFs
Other Panicum virgatum TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00757 Aegilops tauschii F775_00757 I
F775_02479 Aegilops tauschii F775_02479 N
F775_02480 Aegilops tauschii F775_02480 N
F775_07376 Aegilops tauschii F775_07376 I
F775_25840 Aegilops tauschii F775_25840 I
F775_30853 Aegilops tauschii F775_30853 I
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I
WRKY38 Arabidopsis lyrata scaffold_602308.1 I
WRKY67 Arabidopsis thaliana AT1G66550 I
WRKY66 Arabidopsis thaliana AT1G80590 I
WRKY62 Arabidopsis thaliana AT5G01900 D
WRKY38 Arabidopsis thaliana AT5G22570 D
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I
BRADI3G34850 Brachypodium distachyon BRADI3G34850 I
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I
BRADI4G44360 Brachypodium distachyon BRADI4G44360 I
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N
Bra028918 Brassica rapa Bra028918 I
PK10616.1 Cannabis sativa PK10616.1 I
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I
Carubv10012720m.g Capsella rubella Carubv10012720m.g I
Carubv10021420m.g Capsella rubella Carubv10021420m.g I
Carubv10022162m.g Capsella rubella Carubv10022162m.g I
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I
Gorai.009G292600 Gossypium raimondii Gorai.009G292600 I
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I
MLOC_45055 Hordeum vulgare MLOC_45055 I
MLOC_71897 Hordeum vulgare MLOC_71897 I
LPERR05G06630 Leersia perrieri LPERR05G06630 I
LPERR11G00970 Leersia perrieri LPERR11G00970 N
LPERR12G01070 Leersia perrieri LPERR12G01070 I
LPERR12G01080 Leersia perrieri LPERR12G01080 N
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I
OBART05G08130 Oryza barthii OBART05G08130 I
OBART11G01100 Oryza barthii OBART11G01100 N
OBART11G01110 Oryza barthii OBART11G01110 I
OBART12G00850 Oryza barthii OBART12G00850 N
OB03G26140 Oryza brachyantha OB03G26140 I
OB05G17240 Oryza brachyantha OB05G17240 I
OB11G10760 Oryza brachyantha OB11G10760 N
OB12G11030 Oryza brachyantha OB12G11030 N
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N
BGIOSGA017556 Oryza indica BGIOSGA017556 I
BGIOSGA030113 Oryza indica BGIOSGA030113 I
BGIOSGA034612 Oryza indica BGIOSGA034612 I
BGIOSGA034613 Oryza indica BGIOSGA034613 N
BGIOSGA036756 Oryza indica BGIOSGA036756 N
BGIOSGA036757 Oryza indica BGIOSGA036757 N
BGIOSGA040489 Oryza indica BGIOSGA040489 I
OLONG_002978 Oryza longistaminata OLONG_002978 I
OLONG_019907 Oryza longistaminata OLONG_019907 I
OMERI08G11390 Oryza meridionalis OMERI08G11390 I
OMERI11G01520 Oryza meridionalis OMERI11G01520 N
OMERI11G01570 Oryza meridionalis OMERI11G01570 N
ONIVA05G08650 Oryza nivara ONIVA05G08650 I
ONIVA08G13920 Oryza nivara ONIVA08G13920 I
ONIVA09G03360 Oryza nivara ONIVA09G03360 I
ONIVA11G01050 Oryza nivara ONIVA11G01050 N
ONIVA11G01230 Oryza nivara ONIVA11G01230 N
ONIVA11G01240 Oryza nivara ONIVA11G01240 I
OPUNC05G07410 Oryza punctata OPUNC05G07410 I
OPUNC11G00970 Oryza punctata OPUNC11G00970 N
OPUNC11G00980 Oryza punctata OPUNC11G00980 N
OPUNC12G00970 Oryza punctata OPUNC12G00970 N
OPUNC12G00990 Oryza punctata OPUNC12G00990 N
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I
OS08G0386200 Oryza sativa OS08G0386200 I
OS11G0117400 Oryza sativa OS11G0117400 N
OS11G0117500 Oryza sativa OS11G0117500 N
OS12G0116600 Oryza sativa OS12G0116600 N
OS12G0116700 Oryza sativa OS12G0116700 N
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I
Pavir.J05812 Panicum virgatum Pavir.J05812 I
Pavir.J34713 Panicum virgatum Pavir.J34713 N
Pavir.J39511 Panicum virgatum Pavir.J39511 I
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I
Pm003014 Prunus mume Pm003014 I
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I
Si010764m.g Setaria italica Si010764m.g N
Si010832m.g Setaria italica Si010832m.g N
Si019098m.g Setaria italica Si019098m.g N
Si025181m.g Setaria italica Si025181m.g I
Si027360m.g Setaria italica Si027360m.g N
Si028202m.g Setaria italica Si028202m.g I
Sb05g001180 Sorghum bicolor Sb05g001180 N
Sb05g001220 Sorghum bicolor Sb05g001220 N
Sb08g002560 Sorghum bicolor Sb08g002560 N
Sb08g002570 Sorghum bicolor Sb08g002570 N
TCM_045556 Theobroma cacao TCM_045556 I
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I
Traes_5AL_69A969FF4 Triticum aestivum Traes_5AL_69A969FF4 N
Traes_5BL_0A3D332A8 Triticum aestivum Traes_5BL_0A3D332A8 I
Traes_5DL_C93641E43 Triticum aestivum Traes_5DL_C93641E43 I
TRIUR3_14306 Triticum urartu TRIUR3_14306 I
TRIUR3_26571 Triticum urartu TRIUR3_26571 N
TRIUR3_30416 Triticum urartu TRIUR3_30416 I
GRMZM2G169564 Zea mays GRMZM2G169564 N
GRMZM2G441031 Zea mays GRMZM2G441031 I