Pavir.J02630 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J02630 T009549_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.719 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J02630.1.p AP2 36 87

Links

Other AP2 family TFs
Other Panicum virgatum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I
EIN3 Arabidopsis thaliana AT3G20770 D
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I
Bo1g108650 Brassica oleracea Bo1g108650 I
Bra023927 Brassica rapa Bra023927 I
Bra035746 Brassica rapa Bra035746 I
PK13351.1 Cannabis sativa PK13351.1 I
PK01239.1 Cannabis sativa PK01239.1 I
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I
Carubv10022879m.g Capsella rubella Carubv10022879m.g I
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I
Ca_10236 Cicer arietinum Ca_10236 I
Cla011250 Citrullus lanatus Cla011250 I
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I
Cucsa.142750 Cucumis sativus Cucsa.142750 I
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I
GLYMA13G03660 Glycine max GLYMA13G03660 I
GLYMA02G44220 Glycine max GLYMA02G44220 I
GLYMA13G03700 Glycine max GLYMA13G03700 I
GLYMA14G04550 Glycine max GLYMA14G04550 I
GLYMA20G12250 Glycine max GLYMA20G12250 I
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I
MDP0000564884 Malus domestica MDP0000564884 I
MDP0000306498 Malus domestica MDP0000306498 I
MDP0000212881 Malus domestica MDP0000212881 I
MDP0000202831 Malus domestica MDP0000202831 I
cassava3620.m1 Manihot esculenta cassava3620.m1 I
MTR_5g087790 Medicago truncatula MTR_5g087790 I
mgf018950m Mimulus guttatus mgf018950m I
mgf015996m Mimulus guttatus mgf015996m I
Pm017009 Prunus mume Pm017009 I
Pm017011 Prunus mume Pm017011 I
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I
29708.m000185 Ricinus communis 29708.m000185 I
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I