chr5.CM0909.290.nc (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr5.CM0909.290.nc T010207_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.723 0.740
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.723 0.740
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.706 0.820
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.692 0.800
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.692 0.800
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.690 0.740
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.690 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0909.290.nc AP2 237 288

Links

Other AP2 family TFs
Other Lotus japonicus TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.706
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I 0.706
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I 0.718
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.702
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.709
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I 0.706
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I 0.711
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I 0.706
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.692
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I 0.706
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.690
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I 0.707
fgenesh2_kg.7__2984__AT4G13620.1 Arabidopsis lyrata fgenesh2_kg.7__2984__AT4G13620.1 I 0.691
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.723
RAP2-13 Arabidopsis thaliana AT1G22190 I 0.706
ERF055 Arabidopsis thaliana AT1G36060 D 0.692
RAP2-4 Arabidopsis thaliana AT1G78080 D 0.706
ERF062 Arabidopsis thaliana AT4G13620 I 0.691
ERF054 Arabidopsis thaliana AT4G28140 D 0.690
ERF060 Arabidopsis thaliana AT4G39780 I 0.707
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.723
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.696
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I 0.706
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I 0.706
Bostr.2021s0122 Boechera stricta Bostr.2021s0122 I 0.678
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.692
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I 0.707
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.690
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.682
BRADI3G24000 Brachypodium distachyon BRADI3G24000 I 0.681
BRADI3G35560 Brachypodium distachyon BRADI3G35560 I 0.704
BRADI4G29010 Brachypodium distachyon BRADI4G29010 I 0.706
Bo04101s010 Brassica oleracea Bo04101s010 I 0.692
Bo1g002840 Brassica oleracea Bo1g002840 I 0.707
Bo1g051230 Brassica oleracea Bo1g051230 I 0.677
Bo3g152610 Brassica oleracea Bo3g152610 I 0.691
Bo5g037400 Brassica oleracea Bo5g037400 I 0.706
Bo5g069450 Brassica oleracea Bo5g069450 I 0.692
Bo6g081850 Brassica oleracea Bo6g081850 I 0.718
Bo6g121730 Brassica oleracea Bo6g121730 I 0.706
Bo7g111910 Brassica oleracea Bo7g111910 I 0.708
Bo7g119000 Brassica oleracea Bo7g119000 I 0.707
Bo8g054130 Brassica oleracea Bo8g054130 I 0.690
Bra003659 Brassica rapa Bra003659 I 0.705
Bra008343 Brassica rapa Bra008343 I 0.706
Bra010383 Brassica rapa Bra010383 I 0.690
Bra011833 Brassica rapa Bra011833 I 0.706
Bra015634 Brassica rapa Bra015634 I 0.706
Bra017879 Brassica rapa Bra017879 I 0.707
Bra024222 Brassica rapa Bra024222 I 0.708
Bra026280 Brassica rapa Bra026280 I 0.690
Bra031371 Brassica rapa Bra031371 I 0.706
Bra040381 Brassica rapa Bra040381 I 0.692
PK18885.1 Cannabis sativa PK18885.1 I 0.709
PK27482.1 Cannabis sativa PK27482.1 I 0.706
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I 0.706
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.696
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.690
Cagra.1707s0001 Capsella grandiflora Cagra.1707s0001 I 0.692
Cagra.5414s0001 Capsella grandiflora Cagra.5414s0001 I 0.700
Cagra.6748s0006 Capsella grandiflora Cagra.6748s0006 I 0.691
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.682
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.690
Carubv10006710m.g Capsella rubella Carubv10006710m.g I 0.691
Carubv10007787m.g Capsella rubella Carubv10007787m.g I 0.700
Carubv10009949m.g Capsella rubella Carubv10009949m.g I 0.692
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.692
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.682
Carubv10020567m.g Capsella rubella Carubv10020567m.g I 0.706
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.696
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I 0.706
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I 0.706
Ca_08331 Cicer arietinum Ca_08331 I 0.716
Ca_09578 Cicer arietinum Ca_09578 I 0.708
Ca_16631 Cicer arietinum Ca_16631 I 0.692
Ca_23799 Cicer arietinum Ca_23799 I 0.692
Cla003007 Citrullus lanatus Cla003007 I 0.719
Cla014376 Citrullus lanatus Cla014376 I 0.706
Cla022420 Citrullus lanatus Cla022420 I 0.706
Cla023489 Citrullus lanatus Cla023489 I 0.692
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I 0.706
Ciclev10007069m.g Citrus clementina Ciclev10007069m.g I 0.730
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.709
orange1.1g015775m.g Citrus sinensis orange1.1g015775m.g I 0.730
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I 0.706
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.709
Cucsa.064390 Cucumis sativus Cucsa.064390 I 0.692
Cucsa.104510 Cucumis sativus Cucsa.104510 I 0.706
Cucsa.154520 Cucumis sativus Cucsa.154520 I 0.706
Cucsa.193930 Cucumis sativus Cucsa.193930 I 0.719
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I 0.706
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.706
Eucgr.H02782 Eucalyptus grandis Eucgr.H02782 I 0.729
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I 0.706
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I 0.706
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I 0.706
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I 0.706
Thhalv10025587m.g Eutrema salsugineum Thhalv10025587m.g I 0.691
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.692
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.707
gene06669-v1.0-hybrid Fragaria vesca gene06669-v1.0-hybrid I 0.727
gene16350-v1.0-hybrid Fragaria vesca gene16350-v1.0-hybrid I 0.692
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I 0.706
GLYMA04G11290 Glycine max GLYMA04G11290 I 0.706
GLYMA05G31370 Glycine max GLYMA05G31370 I 0.698
GLYMA06G11010 Glycine max GLYMA06G11010 I 0.706
GLYMA08G14600 Glycine max GLYMA08G14600 I 0.698
GLYMA10G33700 Glycine max GLYMA10G33700 I 0.716
GLYMA13G01930 Glycine max GLYMA13G01930 I 0.706
GLYMA14G34590 Glycine max GLYMA14G34590 I 0.706
GLYMA18G02170 Glycine max GLYMA18G02170 I 0.698
GLYMA20G33890 Glycine max GLYMA20G33890 I 0.701
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.709
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.686
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.696
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I 0.706
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I 0.706
Gorai.011G157500 Gossypium raimondii Gorai.011G157500 I 0.730
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.703
MLOC_23044 Hordeum vulgare MLOC_23044 I 0.678
LPERR03G05980 Leersia perrieri LPERR03G05980 I 0.693
LPERR06G07210 Leersia perrieri LPERR06G07210 I 0.680
LPERR08G11750 Leersia perrieri LPERR08G11750 I 0.703
LPERR09G05410 Leersia perrieri LPERR09G05410 I 0.706
Lus10000582.g Linum usitatissimum Lus10000582.g I 0.702
Lus10007124.g Linum usitatissimum Lus10007124.g I 0.726
Lus10016669.g Linum usitatissimum Lus10016669.g I 0.730
Lus10016801.g Linum usitatissimum Lus10016801.g I 0.706
Lus10019665.g Linum usitatissimum Lus10019665.g I 0.702
Lus10020913.g Linum usitatissimum Lus10020913.g I 0.706
Lus10022497.g Linum usitatissimum Lus10022497.g I 0.691
Lus10033463.g Linum usitatissimum Lus10033463.g I 0.706
chr2.CM0608.10.nd Lotus japonicus chr2.CM0608.10.nd I 0.692
chr4.CM0307.180.nc Lotus japonicus chr4.CM0307.180.nc I 0.678
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I 0.706
MDP0000246184 Malus domestica MDP0000246184 I 0.742
MDP0000313476 Malus domestica MDP0000313476 I 0.706
MDP0000453797 Malus domestica MDP0000453797 I 0.692
MDP0000683814 Malus domestica MDP0000683814 I 0.692
MDP0000865032 Malus domestica MDP0000865032 I 0.692
cassava10153.m1 Manihot esculenta cassava10153.m1 I 0.706
cassava14392.m1 Manihot esculenta cassava14392.m1 I 0.736
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.709
cassava27742.m1 Manihot esculenta cassava27742.m1 I 0.731
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.709
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I 0.708
MTR_1g090170 Medicago truncatula MTR_1g090170 I 0.703
MTR_3g074130 Medicago truncatula MTR_3g074130 I 0.706
MTR_5g062700 Medicago truncatula MTR_5g062700 I 0.706
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.708
mgf002388m Mimulus guttatus mgf002388m I 0.706
mgf012639m Mimulus guttatus mgf012639m I 0.689
mgf016403m Mimulus guttatus mgf016403m I 0.692
mgf021372m Mimulus guttatus mgf021372m I 0.718
mgf023311m Mimulus guttatus mgf023311m I 0.709
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.692
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I 0.706
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.692
GSMUA_Achr3G04360_001 Musa acuminata GSMUA_Achr3G04360_001 I 0.693
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I 0.709
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I 0.706
OBART08G14280 Oryza barthii OBART08G14280 I 0.703
OB09G15200 Oryza brachyantha OB09G15200 I 0.706
ORGLA03G0064600 Oryza glaberrima ORGLA03G0064600 I 0.700
ORGLA08G0124900 Oryza glaberrima ORGLA08G0124900 I 0.703
ORGLA09G0057100 Oryza glaberrima ORGLA09G0057100 I 0.706
OGLUM03G06750 Oryza glumaepatula OGLUM03G06750 I 0.700
OGLUM08G15030 Oryza glumaepatula OGLUM08G15030 I 0.703
OGLUM09G08150 Oryza glumaepatula OGLUM09G08150 I 0.706
BGIOSGA011298 Oryza indica BGIOSGA011298 I 0.700
BGIOSGA028650 Oryza indica BGIOSGA028650 I 0.703
BGIOSGA030624 Oryza indica BGIOSGA030624 I 0.706
OMERI03G06570 Oryza meridionalis OMERI03G06570 I 0.700
OMERI09G06210 Oryza meridionalis OMERI09G06210 I 0.706
OMERI09G06220 Oryza meridionalis OMERI09G06220 I 0.706
ONIVA03G06360 Oryza nivara ONIVA03G06360 I 0.700
ONIVA08G15160 Oryza nivara ONIVA08G15160 I 0.703
ONIVA09G06980 Oryza nivara ONIVA09G06980 I 0.706
OPUNC03G06400 Oryza punctata OPUNC03G06400 I 0.700
OPUNC08G13450 Oryza punctata OPUNC08G13450 I 0.703
OPUNC09G06680 Oryza punctata OPUNC09G06680 I 0.706
ORUFI03G06570 Oryza rufipogon ORUFI03G06570 I 0.700
ORUFI08G16150 Oryza rufipogon ORUFI08G16150 I 0.703
ORUFI09G08380 Oryza rufipogon ORUFI09G08380 I 0.706
OS03G0191900 Oryza sativa OS03G0191900 I 0.700
OS08G0408500 Oryza sativa OS08G0408500 I 0.703
Pavir.Ba02199 Panicum virgatum Pavir.Ba02199 I 0.706
Pavir.Bb01980 Panicum virgatum Pavir.Bb01980 I 0.706
Pavir.Fa01600 Panicum virgatum Pavir.Fa01600 I 0.706
Pavir.Fb01192 Panicum virgatum Pavir.Fb01192 I 0.706
Pavir.Ia02495 Panicum virgatum Pavir.Ia02495 I 0.686
Pavir.Ia04894 Panicum virgatum Pavir.Ia04894 I 0.697
Pavir.Ib02920 Panicum virgatum Pavir.Ib02920 I 0.686
Pavir.J13316 Panicum virgatum Pavir.J13316 I 0.679
Pavir.J25956 Panicum virgatum Pavir.J25956 I 0.706
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I 0.711
e_gw1.335.26.1 Physcomitrella patens e_gw1.335.26.1 I 0.696
POPTR_0001s32250 Populus trichocarpa POPTR_0001s32250 I 0.678
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.706
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.709
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I 0.706
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.709
POPTR_0017s08250 Populus trichocarpa POPTR_0017s08250 I 0.698
Pm002052 Prunus mume Pm002052 I 0.706
Pm004824 Prunus mume Pm004824 I 0.706
Pm009494 Prunus mume Pm009494 I 0.734
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I 0.706
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I 0.706
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I 0.720
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I 0.706
28206.m000104 Ricinus communis 28206.m000104 I 0.709
29904.m002941 Ricinus communis 29904.m002941 I 0.727
29908.m006005 Ricinus communis 29908.m006005 I 0.706
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.706
SapurV1A.0058s0570 Salix purpurea SapurV1A.0058s0570 I 0.696
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.709
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I 0.708
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.709
SapurV1A.1542s0030 Salix purpurea SapurV1A.1542s0030 I 0.731
SapurV1A.6751s0010 Salix purpurea SapurV1A.6751s0010 I 0.731
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I 0.693
SELMODRAFT_73149 Selaginella moellendorffii SELMODRAFT_73149 I 0.697
Si030684m.g Setaria italica Si030684m.g I 0.706
Si036827m.g Setaria italica Si036827m.g I 0.697
Si036893m.g Setaria italica Si036893m.g I 0.689
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.709
Solyc04g072900.1 Solanum lycopersicum Solyc04g072900.1 I 0.716
Solyc09g091950.1 Solanum lycopersicum Solyc09g091950.1 I 0.726
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.709
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.709
PGSC0003DMG400009475 Solanum tuberosum PGSC0003DMG400009475 I 0.716
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.709
PGSC0003DMG400031294 Solanum tuberosum PGSC0003DMG400031294 I 0.726
Sb01g044410 Sorghum bicolor Sb01g044410 I 0.697
Sb02g023230 Sorghum bicolor Sb02g023230 I 0.706
Sb07g020090 Sorghum bicolor Sb07g020090 I 0.706
TCM_001147 Theobroma cacao TCM_001147 I 0.709
TCM_020321 Theobroma cacao TCM_020321 I 0.738
TCM_034939 Theobroma cacao TCM_034939 I 0.706
Traes_4AS_1E79E1072 Triticum aestivum Traes_4AS_1E79E1072 I 0.692
Traes_4BL_71E35BBC1 Triticum aestivum Traes_4BL_71E35BBC1 I 0.692
Traes_5BL_4D65B66E2 Triticum aestivum Traes_5BL_4D65B66E2 I 0.706
VIT_00s0662g00030 Vitis vinifera VIT_00s0662g00030 I 0.696
VIT_00s0662g00040 Vitis vinifera VIT_00s0662g00040 I 0.696
VIT_05s0029g00140 Vitis vinifera VIT_05s0029g00140 I 0.725
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I 0.706
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.724
GRMZM2G003466 Zea mays GRMZM2G003466 I 0.697
GRMZM2G039870 Zea mays GRMZM2G039870 I 0.689
GRMZM2G113060 Zea mays GRMZM2G113060 I 0.690
GRMZM2G141679 Zea mays GRMZM2G141679 I 0.706