CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CMQ_6414
(
Grosmannia clavigera
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
CMQ_6414
T014333_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU03892
M01670_2.00
Neurospora crassa
HAAATTTD
HAAATTTD
PBM
Weirauch et al.(2014)
pTH8975
0.553
0.632
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFX01472
ARID/BRIGHT
14
102
DYLEFIAALREYHAKRGTNFDPEPKVGQTPVDLLKLFRLIVEHGGYDKVSEEKLAWRNMVNILELYSSNEASAAYSLKLAYYKNLAAYE
Links
Other
ARID/BRIGHT
family TFs
Other
Grosmannia clavigera
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_05429
Aegilops tauschii
F775_05429
I
Aquca_001_00822
Aquilegia coerulea
Aquca_001_00822
I
HY5
Arabidopsis lyrata
scaffold_601144.1
I
HY5
Arabidopsis thaliana
AT5G11260
D
Bostr.23997s0021
Boechera stricta
Bostr.23997s0021
I
BRADI3G07540
Brachypodium distachyon
BRADI3G07540
I
Bo9g171430
Brassica oleracea
Bo9g171430
I
Bo2g010330
Brassica oleracea
Bo2g010330
I
Bra008976
Brassica rapa
Bra008976
I
Bra023317
Brassica rapa
Bra023317
I
PK17235.1
Cannabis sativa
PK17235.1
I
Cagra.7526s0027
Capsella grandiflora
Cagra.7526s0027
I
evm.TU.supercontig_115.9
Carica papaya
evm.TU.supercontig_115.9
I
Ca_21380
Cicer arietinum
Ca_21380
I
Cla022656
Citrullus lanatus
Cla022656
I
Ciclev10009720m.g
Citrus clementina
Ciclev10009720m.g
I
orange1.1g030957m.g
Citrus sinensis
orange1.1g030957m.g
I
Cucsa.162360
Cucumis sativus
Cucsa.162360
I
Eucgr.C02802
Eucalyptus grandis
Eucgr.C02802
I
Thhalv10004860m.g
Eutrema salsugineum
Thhalv10004860m.g
I
Thhalv10014851m.g
Eutrema salsugineum
Thhalv10014851m.g
I
gene11666-v1.0-hybrid
Fragaria vesca
gene11666-v1.0-hybrid
I
GLYMA18G14750
Glycine max
GLYMA18G14750
I
GLYMA08G41450
Glycine max
GLYMA08G41450
I
Q39895_SOYBN
Glycine max
Q39895_SOYBN
D
LPERR02G06800
Leersia perrieri
LPERR02G06800
I
Lus10002900.g
Linum usitatissimum
Lus10002900.g
I
LjB12O06.40.nc
Lotus japonicus
LjB12O06.40.nc
I
chr6.LjT14A08.90.nd
Lotus japonicus
chr6.LjT14A08.90.nd
I
MDP0000586302
Malus domestica
MDP0000586302
I
MDP0000264514
Malus domestica
MDP0000264514
I
cassava8163.valid.m1
Manihot esculenta
cassava8163.valid.m1
I
MTR_3g436010
Medicago truncatula
MTR_3g436010
I
mgf012104m
Mimulus guttatus
mgf012104m
I
GSMUA_Achr10G27050_001
Musa acuminata
GSMUA_Achr10G27050_001
I
GSMUA_Achr5G06060_001
Musa acuminata
GSMUA_Achr5G06060_001
I
GSMUA_Achr7G09980_001
Musa acuminata
GSMUA_Achr7G09980_001
I
OB02G17160
Oryza brachyantha
OB02G17160
I
ORGLA02G0074000
Oryza glaberrima
ORGLA02G0074000
I
OGLUM02G07920
Oryza glumaepatula
OGLUM02G07920
I
BGIOSGA006916
Oryza indica
BGIOSGA006916
I
OLONG_023968
Oryza longistaminata
OLONG_023968
I
ONIVA02G09400
Oryza nivara
ONIVA02G09400
I
OPUNC02G07060
Oryza punctata
OPUNC02G07060
I
OS02G0203000
Oryza sativa
OS02G0203000
I
Pavir.Db01231
Panicum virgatum
Pavir.Db01231
I
Pavir.Aa02966
Panicum virgatum
Pavir.Aa02966
I
Pavir.Da00549
Panicum virgatum
Pavir.Da00549
I
POPTR_0006s26800
Populus trichocarpa
POPTR_0006s26800
I
POPTR_0018s01530
Populus trichocarpa
POPTR_0018s01530
I
PRUPE_ppa012064mg
Prunus persica
PRUPE_ppa012064mg
I
29848.m004650
Ricinus communis
29848.m004650
I
SapurV1A.0073s0400
Salix purpurea
SapurV1A.0073s0400
I
Si018524m.g
Setaria italica
Si018524m.g
I
Solyc08g061130.2
Solanum lycopersicum
Solyc08g061130.2
I
PGSC0003DMG401020784
Solanum tuberosum
PGSC0003DMG401020784
I
Sb04g007060
Sorghum bicolor
Sb04g007060
I
Sb10g023420
Sorghum bicolor
Sb10g023420
I
Traes_6AS_AFF47E71C
Triticum aestivum
Traes_6AS_AFF47E71C
I
Traes_6BS_993CBD840
Triticum aestivum
Traes_6BS_993CBD840
I
HY5
Vitis vinifera
VIT_04s0008g05210
I
GRMZM2G140355
Zea mays
GRMZM2G140355
I
GRMZM2G137046
Zea mays
GRMZM2G137046
I