arid5b (Takifugu rubripes)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSTRUG00000010671 T014806_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.738 0.884
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.738 0.884
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.738 0.884
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.738 0.884
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.657 0.756
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.657 0.756
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.630 0.640
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.506 0.605
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000026934 ARID/BRIGHT 323 409
ENSTRUP00000026935 ARID/BRIGHT 328 414
ENSTRUP00000026936 ARID/BRIGHT 79 165

Links

Other ARID/BRIGHT family TFs
Other Takifugu rubripes TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I
LIN28B Anolis carolinensis ENSACAG00000003957 I
Afo_R008930 Aptenodytes forsteri Afo_R008930 I
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I
yakA12818 Bos grunniens yakA12818 I
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I
LIN28B Bos taurus ENSBTAG00000043973 I
Brh_R006709 Buceros rhinoceros Brh_R006709 I
LIN28A Callithrix jacchus ENSCJAG00000009796 I
Aan_R005866 Calypte anna Aan_R005866 I
Aan_R002277 Calypte anna Aan_R002277 I
LIN28A Canis familiaris ENSCAFG00000012488 I
Cmyd_10021069 Chelonia mydas Cmyd_10021069 I
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I
LIN28A Equus caballus ENSECAG00000020267 I
LIN28B Equus caballus ENSECAG00000020994 I
LIN28B Erinaceus europaeus ENSEEUG00000003632 I
LIN28A Felis catus ENSFCAG00000012810 I
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I
LIN28B Gallus gallus ENSGALG00000026761 I
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I
Gfo_R011576 Geospiza fortis Gfo_R011576 I
LIN28A Gorilla gorilla ENSGGOG00000024918 I
LIN28A Homo sapiens ENSG00000131914 I
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I
LIN28A Loxodonta africana ENSLAFG00000017525 I
ENSP00000254231 Macaca fascicularis ENSP00000254231 I
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I
LIN28A Meleagris gallopavo ENSMGAG00000009456 I
LIN28B Meleagris gallopavo ENSMGAG00000013531 I
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I
Lin28a Mus musculus ENSMUSG00000050966 I
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I
LIN28B Myotis lucifugus ENSMLUG00000006883 I
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I
LIN28A Ochotona princeps ENSOPRG00000001591 I
Ogr09706 Ophisaurus gracilis Ogr09706 I
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I
LIN28A Otolemur garnettii ENSOGAG00000003971 I
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I
LIN28A Pan troglodytes ENSPTRG00000000384 I
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I
Pvit_17184 Pogona vitticeps Pvit_17184 I
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I
LIN28A Pteropus vampyrus ENSPVAG00000017267 I
Lin28a Rattus norvegicus ENSRNOG00000060320 I
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I
LIN28A Sus scrofa ENSSSCG00000003557 I
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I
lin28a Takifugu rubripes ENSTRUG00000009454 I
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I
LIN28A Tursiops truncatus ENSTTRG00000005678 I
Tal_R007754 Tyto alba Tal_R007754 I
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I