Bra010070 (Brassica rapa)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02178 (AT_hook) IPR017956 Bra010070 T017265_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_4g101990
M01687_2.00 		Medicago truncatula
AAAWTAAT
ATTAWTTT		 PBM
Weirauch et al.(2014)
pTH9209 		0.991 0.923
PK00377.1
M01107_2.00 		Cannabis sativa
DAWWWAWW
WWTWWWTH		 PBM
Lambert et al.(2019)
pTH11338 		0.991 0.846
BRADI5G22430
M01674_2.00 		Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB		 PBM
Weirauch et al.(2014)
pTH9242 		0.991 0.692
kmt2cb
M01679_2.00 		Danio rerio
WWAWAWAT
ATWTWTWW		 PBM
Weirauch et al.(2014)
pTH7876 		0.991 0.615
Setbp1
M01683_2.00 		Mus musculus
NDNNNNNNHN
NDNNNNNNHN		 PBM
Weirauch et al.(2014)
pTH1294 		0.991 0.615
Ahctf1
M00750_2.00 		Mus musculus
AAAWAWAW
ATWTWTTT		 PBM
Weirauch et al.(2013)
pTH2361 		0.991 0.615
Xrp1
M01686_2.00 		Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH9260 		0.991 0.615
PK26376.1
M01108_2.00 		Cannabis sativa
DDWWWAWW
WWTWWWHH		 PBM
Lambert et al.(2019)
pTH11261 		0.991 0.615
Xrp1
M05900_2.00 		Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY		 B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113 		0.991 0.615
ATEG_07399
M01676_2.00 		Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH		 PBM
Weirauch et al.(2014)
pTH9237 		0.991 0.538
ENSACAG00000014978
M01677_2.00 		Anolis carolinensis
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9222 		0.991 0.538
phf21ab
M01678_2.00 		Danio rerio
NNNDNADW
WHTNHNNN		 PBM
Weirauch et al.(2014)
pTH9254 		0.991 0.538
phf21ab
M01680_2.00 		Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT		 PBM
Weirauch et al.(2014)
pTH9180 		0.991 0.538
PHF21A
M01681_2.00 		Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD		 PBM
Weirauch et al.(2014)
pTH7875 		0.991 0.538
PHF21A
M01103_2.00 		Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN		 PBM
Lambert et al.(2019)
pTH9309 		0.991 0.538
PHF21A
M01682_2.00 		Monodelphis domestica
NNNNNHRH
DYDNNNNN		 PBM
Weirauch et al.(2014)
pTH9335 		0.991 0.538
Phf21a
M01684_2.00 		Mus musculus
NNNATATWAATN
NATTWATATNNN		 PBM
Weirauch et al.(2014)
pTH8550 		0.991 0.538
AHL13
M01672_2.00 		Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN		 PBM
Weirauch et al.(2014)
pTH8202 		0.991 0.462
BRADI3G55950
M01673_2.00 		Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH9369 		0.991 0.462
OS02G0824300
M01688_2.00 		Oryza sativa
NNDWAWWN
NWWTWHNN		 PBM
Weirauch et al.(2014)
pTH8406 		0.991 0.462
estExt_fgeneshNG_pg.C_820014
M01692_2.00 		Naegleria gruberi
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9380 		0.991 0.462
VIT_08s0007g04020
M01689_2.00 		Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH		 PBM
Weirauch et al.(2014)
pTH9295 		0.991 0.400
FGRRES_17512
M01105_2.00 		Fusarium graminearum
NNNDNWWWW
WWWWNHNNN		 PBM
Lambert et al.(2019)
pTH11412 		0.991 0.360
TVAG_474020
M01106_2.00 		Trichomonas vaginalis
DNWWWAWW
WWTWWWNH		 PBM
Lambert et al.(2019)
pTH11493 		0.991 0.346
SUM1
M00008_2.00 		Saccharomyces cerevisiae
NNDWWWH
DWWWHNN		 PBM
Badis et al.(2008)
SUM1_2124 		0.991 0.292
SUM1
M07439_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1 		0.991 0.269
SUM1
M08478_2.00 		Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY		 Misc
DeBoer et al.(2011)
YDR310C_383 		0.991 0.269
SUM1
M08479_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 Misc
DeBoer et al.(2011)
YDR310C_478 		0.991 0.269
Q7DLU9_PEA
M09772_2.00 		Pisum sativum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HMGIY_01 		0.991 0.231
ANIA_01690
M01675_2.00 		Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH8216 		0.991 0.216
ENSPPYG00000004736
M01685_2.00 		Pongo abelii
NNNNDWWW
WWWHNNNN		 PBM
Weirauch et al.(2014)
pTH9279 		0.991 0.211
NCU05635
M01694_2.00 		Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN		 PBM
Weirauch et al.(2014)
pTH8863 		0.991 0.211
HMGA1
M09769_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_01 		0.991 0.205
HMGA1
M09770_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_Q4 		0.991 0.205
Hmga2
M00751_2.00 		Mus musculus
NNNNRHWWNN
NNWWDYNNNN		 PBM
Weirauch et al.(2013)
pTH3046 		0.991 0.179
HMGA2
M09771_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGA2_01 		0.991 0.179
FGRRES_05233
M01104_2.00 		Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN		 PBM
Lambert et al.(2019)
pTH11377 		0.991 0.154
HMGA
M01671_2.00 		Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH7395 		0.991 0.115
HMG-I Y
M02652_2.00 		Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN		 SELEX
Mathelier et al.(2014)
MA0045.1 		0.991 0.115
athp-3
M01691_2.00 		Caenorhabditis elegans
NNDDWDH
DHWHHNN		 PBM
Weirauch et al.(2014)
pTH9097 		0.991 0.113
hmg-12
M01690_2.00 		Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN		 PBM
Weirauch et al.(2014)
pTH8997 		0.991 0.099
NCU01145
M01693_2.00 		Neurospora crassa
RWATAWWTNN
NNAWWTATWY		 PBM
Weirauch et al.(2014)
pTH8916 		0.991 0.097
SUM1
M01517_2.00 		Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN		 PBM
Zhu et al.(2009)
Sum1 		0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010070.1-P AT hook 82 94

Links

Other AT hook family TFs
Other Brassica rapa TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01891 Acanthocheilonema viteae nAv.1.0.1.g01891 I
ACYPI007601 Acyrthosiphon pisum ACYPI007601 I
AAEL007190 Aedes aegypti AAEL007190 I
ENSAMEG00000008835 Ailuropoda melanoleuca ENSAMEG00000008835 I
Alligator_sinensis_CCG020979.1 Alligator sinensis Alligator_sinensis_CCG020979.1 I
ANCCAN_05510 Ancylostoma caninum ANCCAN_05510 I
ANCCEY_01724 Ancylostoma ceylanicum ANCCEY_01724 I
NR2E3 Anolis carolinensis ENSACAG00000011910 I
AALB001133 Anopheles albimanus AALB001133 I
AARA003887 Anopheles arabiensis AARA003887 I
AATE003142 Anopheles atroparvus AATE003142 I
ACOM026748 Anopheles coluzzii ACOM026748 I
ADAC006988 Anopheles darlingi ADAC006988 I
AEPI011067 Anopheles epiroticus AEPI011067 I
AFAF011447 Anopheles farauti AFAF011447 I
AMEM000983 Anopheles merus AMEM000983 I
GB49738 Apis mellifera GB49738 I
Afo_R007066 Aptenodytes forsteri Afo_R007066 I
ASU_07884 Ascaris suum ASU_07884 I
ENSAMXG00000017872 Astyanax mexicanus ENSAMXG00000017872 I
BGLB004019 Biomphalaria glabrata BGLB004019 I
ENSBTAP00000048604-D1 Bos grunniens ENSBTAP00000048604-D1 I
NR2E3 Bos taurus ENSBTAG00000014236 I
e_gw.107.44.1 Branchiostoma floridae e_gw.107.44.1 I
e_gw.324.28.1 Branchiostoma floridae e_gw.324.28.1 I
Bm4485 Brugia malayi Bm4485 I
BTMF_0001091401 Brugia timori BTMF_0001091401 I
BXY_0039800 Bursaphelenchus xylophilus BXY_0039800 I
BXY_0327700 Bursaphelenchus xylophilus BXY_0327700 I
CBN22518 Caenorhabditis brenneri CBN22518 I
CBG14155 Caenorhabditis briggsae CBG14155 I
fax-1 Caenorhabditis elegans WBGene00001400 I
CJA07370 Caenorhabditis japonica CJA07370 I
CRE00427 Caenorhabditis remanei CRE00427 I
NR2E3 Callithrix jacchus ENSCJAG00000018552 I
Aan_R004022 Calypte anna Aan_R004022 I
CapteG171557 Capitella teleta CapteG171557 I
NR2E3 Cavia porcellus ENSCPOG00000008974 I
Cmyd_10012017 Chelonia mydas Cmyd_10012017 I
ENSCSAG00000013721 Chlorocebus sabaeus ENSCSAG00000013721 I
CLEC004804 Cimex lectularius CLEC004804 I
csin100859 Clonorchis sinensis csin100859 I
CGI_10007932 Crassostrea gigas CGI_10007932 I
CGOC_0000187501 Cylicostephanus goldi CGOC_0000187501 I
nr2e3 Danio rerio ENSDARG00000045904 I
DAPPUDRAFT_106791 Daphnia pulex DAPPUDRAFT_106791 I
DICVIV_11193 Dictyocaulus viviparus DICVIV_11193 I
nDi.2.2.2.g10236 Dirofilaria immitis nDi.2.2.2.g10236 I
GF13031 Drosophila ananassae FBgn0090064 I
GH20426 Drosophila grimshawi FBgn0127889 I
Hr51 Drosophila melanogaster FBgn0034012 D
GI19610 Drosophila mojavensis FBgn0142347 I
GL17752 Drosophila persimilis FBgn0155355 I
GA30480 Drosophila pseudoobscura FBgn0264774 D
GD11109 Drosophila simulans FBgn0182865 I
GJ14974 Drosophila virilis FBgn0202177 I
GK20892 Drosophila willistoni FBgn0222886 I
GE13645 Drosophila yakuba FBgn0231304 I
ECPE_0000243601 Echinostoma caproni ECPE_0000243601 I
EVEC_0000564801 Enterobius vermicularis EVEC_0000564801 I
NR2E3 Felis catus ENSFCAG00000031082 I
ENSFALG00000009699 Ficedula albicollis ENSFALG00000009699 I
ENSGMOG00000008342 Gadus morhua ENSGMOG00000008342 I
ENSGMOG00000019194 Gadus morhua ENSGMOG00000019194 I
NR2E3 Gallus gallus ENSGALG00000002093 I
nr2e3 Gasterosteus aculeatus ENSGACG00000004739 I
NR2E3 Gasterosteus aculeatus ENSGACG00000017060 I
Gfo_R008863 Geospiza fortis Gfo_R008863 I
GPLIN_000669800 Globodera pallida GPLIN_000669800 I
NR2E3 Gorilla gorilla ENSGGOG00000004383 I
HCOI01781300 Haemonchus contortus HCOI01781300 I
Hsal_07902--XP_396999.3_APIME Harpegnathos saltator Hsal_07902--XP_396999.3_APIME I
HelroG139475 Helobdella robusta HelroG139475 I
Hba_15323 Heterorhabditis bacteriophora Hba_15323 I
NR2E3 Homo sapiens ENSG00000278570 D
ENSSTOG00000012080 Ictidomys tridecemlineatus ENSSTOG00000012080 I
ISCW019467 Ixodes scapularis ISCW019467 I
ENSLACG00000022378 Latimeria chalumnae ENSLACG00000022378 I
ENSLOCG00000014973 Lepisosteus oculatus ENSLOCG00000014973 I
LDEC022044 Leptinotarsa decemlineata LDEC022044 I
nLs.2.1.2.g01701 Litomosoides sigmodontis nLs.2.1.2.g01701 I
LOAG_06205 Loa loa LOAG_06205 I
LotgiG137595 Lottia gigantea LotgiG137595 I
NR2E3 Loxodonta africana ENSLAFG00000021987 I
NR2E3 Macaca mulatta ENSMMUG00000019276 I
ENSMEUG00000016597 Macropus eugenii ENSMEUG00000016597 I
NR2E3 Meleagris gallopavo ENSMGAG00000001449 I
genemark-nMf.1.1.scaf00188-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00188-processed-gene-0.4 I
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 I
MhA1_Contig1792.frz3.gene6 Meloidogyne hapla MhA1_Contig1792.frz3.gene6 I
NR2E3 Monodelphis domestica ENSMODG00000001949 I
MDOA010244 Musca domestica MDOA010244 I
ENSMPUG00000017103 Mustela putorius furo ENSMPUG00000017103 I
Nr2e3 Mus musculus ENSMUSG00000032292 D
Myotis_brandtii_NR2E3_10027281 Myotis brandtii Myotis_brandtii_NR2E3_10027281 I
NR2E3 Myotis lucifugus ENSMLUG00000008408 I
NV14480 Nasonia vitripennis NV14480 I
ENSNLEG00000013807 Nomascus leucogenys ENSNLEG00000013807 I
NR2E3 Ochotona princeps ENSOPRG00000006427 I
OESDEN_00114 Oesophagostomum dentatum OESDEN_00114 I
OFLC_0000991001 Onchocerca flexuosa OFLC_0000991001 I
nOo.2.0.1.g01040 Onchocerca ochengi nOo.2.0.1.g01040 I
nOo.2.0.1.g10097 Onchocerca ochengi nOo.2.0.1.g10097 I
nOo.2.0.1.g11611 Onchocerca ochengi nOo.2.0.1.g11611 I
WBGene00240517 Onchocerca volvulus WBGene00240517 I
Ogr12843 Ophisaurus gracilis Ogr12843 I
ENSONIG00000007109 Oreochromis niloticus ENSONIG00000007109 I
ENSONIG00000015396 Oreochromis niloticus ENSONIG00000015396 I
NR2E3 Oryzias latipes ENSORLG00000000011 I
nr2e3 Oryzias latipes ENSORLG00000007175 I
NR2E3 Otolemur garnettii ENSOGAG00000006128 I
ENSOARG00000018808 Ovis aries ENSOARG00000018808 I
NR2E3 Pan troglodytes ENSPTRG00000007242 I
ENSPANG00000016257 Papio anubis ENSPANG00000016257 I
PTRK_0000446300 Parastrongyloides trichosuri PTRK_0000446300 I
PHUM039420 Pediculus humanus PHUM039420 I
ENSPMAG00000009792 Petromyzon marinus ENSPMAG00000009792 I
ENSPFOG00000006106 Poecilia formosa ENSPFOG00000006106 I
ENSPFOG00000006516 Poecilia formosa ENSPFOG00000006516 I
Pvit_13689 Pogona vitticeps Pvit_13689 I
scaffold296-EXSNAP2012.8 Pristionchus exspectatus scaffold296-EXSNAP2012.8 I
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I
Ppa-fax-1 Pristionchus pacificus PPA00264 I
Ppa-nhr-3 Pristionchus pacificus PPA28597 I
NR2E3 Procavia capensis ENSPCAG00000014733 I
NR2E3 Pteropus vampyrus ENSPVAG00000009088 I
Nr2e3 Rattus norvegicus ENSRNOG00000050690 I
RSKR_0000698500 Rhabditophanes kr3021 RSKR_0000698500 I
RPRC002557 Rhodnius prolixus RPRC002557 I
Sakowv30007027m.g Saccoglossus kowalevskii Sakowv30007027m.g I
Smp_167770 Schistosoma mansoni Smp_167770 I
SMRZ_0000841101 Schistosoma margrebowiei SMRZ_0000841101 I
SMTD_0001566201 Schistosoma mattheei SMTD_0001566201 I
SMU15015045 Schmidtea mediterranea SMU15015045 I
SMU15029049 Schmidtea mediterranea SMU15029049 I
SMU15038222 Schmidtea mediterranea SMU15038222 I
SBAD_0000006401 Soboliphyme baturini SBAD_0000006401 I
L596_g2163 Steinernema carpocapsae L596_g2163 I
L889_g11978 Steinernema feltiae L889_g11978 I
L893_g28297 Steinernema glaseri L893_g28297 I
L898_g15355 Steinernema monticolum L898_g15355 I
L892_g9366 Steinernema scapterisci L892_g9366 I
SMAR005628 Strigamia maritima SMAR005628 I
SMAR006008 Strigamia maritima SMAR006008 I
SPU_014405 Strongylocentrotus purpuratus SPU_014405 I
SPAL_0001117000 Strongyloides papillosus SPAL_0001117000 I
SSTP_0000090600 Strongyloides stercoralis SSTP_0000090600 I
SVE_0933400 Strongyloides venezuelensis SVE_0933400 I
NR2E3 Sus scrofa ENSSSCG00000004978 I
SMUV_0000245701 Syphacia muris SMUV_0000245701 I
ENSTGUG00000004498 Taeniopygia guttata ENSTGUG00000004498 I
NR2E3 Takifugu rubripes ENSTRUG00000015582 I
TELCIR_21617 Teladorsagia circumcincta TELCIR_21617 I
tetur01g11040 Tetranychus urticae tetur01g11040 I
NR2E3 Tetraodon nigroviridis ENSTNIG00000005150 I
TCLT_0000456401 Thelazia callipaeda TCLT_0000456401 I
TCNE_0001716001 Toxocara canis TCNE_0001716001 I
TC009378 Tribolium castaneum TC009378 I
D917_05007 Trichinella nativa D917_05007 I
EFV56045 Trichinella spiralis EFV56045 I
TRE_0000223201 Trichobilharzia regenti TRE_0000223201 I
D918_07443 Trichuris suis D918_07443 I
TTRE_0000600201 Trichuris trichiura TTRE_0000600201 I
NR2E3 Tupaia belangeri ENSTBEG00000011672 I
NR2E3 Tursiops truncatus ENSTTRG00000009410 I
WUBG_05086 Wuchereria bancrofti WUBG_05086 I
nr2e3 Xenopus tropicalis XB-GENE-485801 I
ENSXMAG00000010311 Xiphophorus maculatus ENSXMAG00000010311 I
ENSXMAG00000015842 Xiphophorus maculatus ENSXMAG00000015842 I
L798_02234 Zootermopsis nevadensis L798_02234 I