CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

chr2.CM0262.200.nc *(Lotus japonicus)* B3
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02362 (B3)	IPR003340	chr2.CM0262.200.nc	T024387_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
VRN1 M06704_2.00	Arabidopsis thaliana	WWWTTTTTTTTTTTTTTTTTTTTTTTKTN	NAMAAAAAAAAAAAAAAAAAAAAAAAWWW	Dap-seq OMalley et al.(2016) VRN1_col_a	0.700	0.700
VRN1 M06705_2.00	Arabidopsis thaliana	NWBNTTTTTTTTTTTTKKB	VMMAAAAAAAAAAAANVWN	Dap-seq OMalley et al.(2016) VRN1_colamp_a	0.700	0.700
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
chr2.CM0262.200.nc	B3	5	98	CFHKLVLPSTLQSRQLGIPDNFLRKYGGQLSTIATLTVPDGTVWRVGLKKADNRIWFADGWQEFVQRYTIGIGYFLVFMYEGNSSFIVHIFNMS
chr2.CM0262.200.nc	B3	302	397	CRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQVADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRTRDVVLQVTLFRLT

Links
Other B3 family TFs
Other *Lotus japonicus* TFs