PGSC0003DMG400021240 (Solanum tuberosum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 PGSC0003DMG400021240 T027243_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400054708 BED ZF 17 68
PGSC0003DMT400054709 BED ZF 17 68

Links

Other BED ZF family TFs
Other Solanum tuberosum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc10g007810.2 Solanum lycopersicum Solyc10g007810.2 N 1.000
VIT_12s0142g00390 Vitis vinifera VIT_12s0142g00390 N 0.955
cassava35563.valid.m1 Manihot esculenta cassava35563.valid.m1 N 0.955
TCM_001836 Theobroma cacao TCM_001836 N 0.953
Gorai.012G042700 Gossypium raimondii Gorai.012G042700 N 0.953
mgf000829m Mimulus guttatus mgf000829m N 0.932
Eucgr.K01194 Eucalyptus grandis Eucgr.K01194 N 0.932
cassava21091.m1 Manihot esculenta cassava21091.m1 N 0.930
Cucsa.185330 Cucumis sativus Cucsa.185330 N 0.909
GLYMA08G42321 Glycine max GLYMA08G42321 N 0.884
GLYMA18G12556 Glycine max GLYMA18G12556 N 0.884
PK13949.1 Cannabis sativa PK13949.1 N 0.860
Bostr.10273s0360 Boechera stricta Bostr.10273s0360 N 0.833
Cagra.10840s0006 Capsella grandiflora Cagra.10840s0006 N 0.833
Carubv10022346m.g Capsella rubella Carubv10022346m.g N 0.833
Aquca_039_00001 Aquilegia coerulea Aquca_039_00001 N 0.791
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.786
Pm014562 Prunus mume Pm014562 N 0.786
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.786
Thhalv10018229m.g Eutrema salsugineum Thhalv10018229m.g N 0.750
Bo6g110620 Brassica oleracea Bo6g110620 N 0.738
Aquca_102_00001 Aquilegia coerulea Aquca_102_00001 N 0.705