Carubv10022346m.g (Capsella rubella)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Carubv10022346m.g T028228_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022346m BED ZF 16 63

Links

Other BED ZF family TFs
Other Capsella rubella TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.10273s0360 Boechera stricta Bostr.10273s0360 N 1.000
Cagra.10840s0006 Capsella grandiflora Cagra.10840s0006 N 1.000
Thhalv10018229m.g Eutrema salsugineum Thhalv10018229m.g N 0.886
Bo6g110620 Brassica oleracea Bo6g110620 N 0.881
VIT_12s0142g00390 Vitis vinifera VIT_12s0142g00390 N 0.857
PGSC0003DMG400021240 Solanum tuberosum PGSC0003DMG400021240 N 0.833
Solyc10g007810.2 Solanum lycopersicum Solyc10g007810.2 N 0.833
cassava35563.valid.m1 Manihot esculenta cassava35563.valid.m1 N 0.818
TCM_001836 Theobroma cacao TCM_001836 N 0.814
Gorai.012G042700 Gossypium raimondii Gorai.012G042700 N 0.814
GLYMA08G42321 Glycine max GLYMA08G42321 N 0.810
GLYMA18G12556 Glycine max GLYMA18G12556 N 0.810
Cucsa.185330 Cucumis sativus Cucsa.185330 N 0.810
PK13949.1 Cannabis sativa PK13949.1 N 0.810
mgf000829m Mimulus guttatus mgf000829m N 0.795
Eucgr.K01194 Eucalyptus grandis Eucgr.K01194 N 0.795
cassava21091.m1 Manihot esculenta cassava21091.m1 N 0.791
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.786
Pm014562 Prunus mume Pm014562 N 0.786
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.786
Aquca_039_00001 Aquilegia coerulea Aquca_039_00001 N 0.738
Aquca_102_00001 Aquilegia coerulea Aquca_102_00001 N 0.714