BHLHE41 (Sus scrofa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSSSCG00000028552 T037466_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 1.000
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 1.000
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 1.000
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 1.000
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 1.000
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 1.000
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 1.000
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 0.981
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 0.981
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 0.981
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 0.981
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 0.981
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 0.981
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 0.981
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 0.981
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 0.981
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 0.981
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 0.981
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 0.981
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 0.981
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 0.981
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000020055 bHLH 46 100

Links

Other bHLH family TFs
Other Sus scrofa TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_03178 Aegilops tauschii F775_03178 N 0.000
F775_07483 Aegilops tauschii F775_07483 I 0.000
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.000
BRADI2G40920 Brachypodium distachyon BRADI2G40920 N 0.000
BRADI2G61760 Brachypodium distachyon BRADI2G61760 N 0.000
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.000
LPERR01G16660 Leersia perrieri LPERR01G16660 N 0.000
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.000
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.000
Lus10035008.g Linum usitatissimum Lus10035008.g I 0.000
GSMUA_Achr4G08610_001 Musa acuminata GSMUA_Achr4G08610_001 N 0.000
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.000
OBART01G19230 Oryza barthii OBART01G19230 N 0.000
OB06G17750 Oryza brachyantha OB06G17750 I 0.000
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.000
OGLUM01G22860 Oryza glumaepatula OGLUM01G22860 N 0.000
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.000
BGIOSGA001434 Oryza indica BGIOSGA001434 N 0.000
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.000
ONIVA01G21910 Oryza nivara ONIVA01G21910 N 0.000
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.000
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.000
ORUFI01G21630 Oryza rufipogon ORUFI01G21630 N 0.000
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.000
OS06G0228950 Oryza sativa OS06G0228950 I 0.000
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.000
Pavir.Eb01347 Panicum virgatum Pavir.Eb01347 N 0.000
Pavir.Ea01492 Panicum virgatum Pavir.Ea01492 N 0.000
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.000
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.000
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.000
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N 0.000
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.000
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.000
Si020172m.g Setaria italica Si020172m.g I 0.000
Si008273m.g Setaria italica Si008273m.g I 0.000
Si005102m.g Setaria italica Si005102m.g N 0.000
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.000
Sb03g025130 Sorghum bicolor Sb03g025130 N 0.000
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.000
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.000
GRMZM2G071322 Zea mays GRMZM2G071322 N 0.000
AC207342.3_FG001 Zea mays AC207342.3_FG001 N 0.000
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.000