Lus10013052.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10013052.g T050186_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.914 0.980
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.914 0.941
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.902 0.941
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.902 0.941
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.902 0.922
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.902 0.902
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.888 0.941
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.875 0.863
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.875 0.863
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.824
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.804
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.804
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.842 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013052 bHLH 335 385

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

901 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04392 Aegilops tauschii F775_04392 I 0.000
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.000
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.000
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.000
SPL7 Arabidopsis thaliana AT5G18830 D 0.000
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.000
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.000
Bo00629s160 Brassica oleracea Bo00629s160 I 0.000
Bo9g154530 Brassica oleracea Bo9g154530 I 0.000
Bra002188 Brassica rapa Bra002188 I 0.000
Bra023695 Brassica rapa Bra023695 I 0.000
PK29723.1 Cannabis sativa PK29723.1 I 0.000
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.000
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.000
Ca_00550 Cicer arietinum Ca_00550 I 0.000
Cla022022 Citrullus lanatus Cla022022 I 0.000
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.000
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.000
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.000
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.000
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.000
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.000
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.000
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.000
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.000
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.000
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.000
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.000
MDP0000195461 Malus domestica MDP0000195461 I 0.000
MDP0000271587 Malus domestica MDP0000271587 I 0.000
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.000
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.000
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.000
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.000
mgf004695m Mimulus guttatus mgf004695m I 0.000
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.000
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.000
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.000
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.000
OBART05G16150 Oryza barthii OBART05G16150 I 0.000
OB05G24080 Oryza brachyantha OB05G24080 I 0.000
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.000
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.000
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.000
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.000
SPL9 Oryza sativa OS05G0408200 I 0.000
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.000
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.000
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.000
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.000
Pm008092 Prunus mume Pm008092 I 0.000
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.000
29726.m003959 Ricinus communis 29726.m003959 I 0.000
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.000
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.000
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.000
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.000
Si021754m.g Setaria italica Si021754m.g I 0.000
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.000
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.000
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.000
TCM_021101 Theobroma cacao TCM_021101 I 0.000
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.000
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.000
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.000