GFI1B (Oryctolagus cuniculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOCUG00000001793 T102926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.827 0.993
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.827 0.993
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.827 0.993
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.827 0.993
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.827 0.993
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.827 0.993
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.825 0.986
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.825 0.986
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.825 0.986
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.817 0.986
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.782 0.833
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.781 0.877
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.781 0.877
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.781 0.877
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.781 0.877
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.781 0.877
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.781 0.877
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.781 0.877
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.781 0.877
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.779 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000001542 C2H2 ZF 228 251
ENSOCUP00000001542 C2H2 ZF 257 279
ENSOCUP00000001542 C2H2 ZF 285 307
ENSOCUP00000001542 C2H2 ZF 313 335
ENSOCUP00000001542 C2H2 ZF 341 363
ENSOCUP00000001542 C2H2 ZF 369 392

Links

Other C2H2 ZF family TFs
Other Oryctolagus cuniculus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00004p00270570 Amborella trichopoda AMTR_s00004p00270570 N
Aquca_008_00025 Aquilegia coerulea Aquca_008_00025 N
PK21020.1 Cannabis sativa PK21020.1 N
evm.TU.supercontig_34.30 Carica papaya evm.TU.supercontig_34.30 N
orange1.1g009215m.g Citrus sinensis orange1.1g009215m.g N
Eucgr.F04460 Eucalyptus grandis Eucgr.F04460 N
gene18499-v1.0-hybrid Fragaria vesca gene18499-v1.0-hybrid N
GLYMA15G28410 Glycine max GLYMA15G28410 N
Gorai.002G110100 Gossypium raimondii Gorai.002G110100 N
Lus10031172.g Linum usitatissimum Lus10031172.g N
Lus10031748.g Linum usitatissimum Lus10031748.g N
cassava20476.m1 Manihot esculenta cassava20476.m1 N
MTR_8g442410 Medicago truncatula MTR_8g442410 N
PDK_20s1507561g001 Phoenix dactylifera PDK_20s1507561g001 N
POPTR_0005s09790 Populus trichocarpa POPTR_0005s09790 N
Pm011106 Prunus mume Pm011106 N
PRUPE_ppa004256mg Prunus persica PRUPE_ppa004256mg N
30169.m006306 Ricinus communis 30169.m006306 N
SapurV1A.0404s0280 Salix purpurea SapurV1A.0404s0280 N
TCM_033446 Theobroma cacao TCM_033446 N
VIT_19s0085g00540 Vitis vinifera VIT_19s0085g00540 N