CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm011106
(
Prunus mume
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pm011106
T201963_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm011106
GRAS
154
525
LVHMLLACAEAVGCRDTKLAESLLSQIWVSVSPWGDSLQRVSSCFAMGLKSRLSLLHNVNINGTFNNDTMDVSLTSREEKLEAFQLLNQTTPYIAFGFMVANEAICQAAQGKENLHIIDLGMEHTLQWPSLIRTLASRPEGPPKKLRITGLVEDHNVFELEAGMKALVEEASSLGIPTEFNMISEPVKPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQALKKLGPTVLTLVEQDANHNGPFFLGRFLESLHFYSAIFDSLEASLPRNSPQRMKIERQHFANEIRNIVAFEGLNRIERHERADQWRRQLGRAGYQVMGLKCTSQARMMLSVYGCDGYTLASEKGCLLLGWKGRPIMLASAWQ
Links
Other
GRAS
family TFs
Other
Prunus mume
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa004256mg
Prunus persica
PRUPE_ppa004256mg
N
0.984
gene18499-v1.0-hybrid
Fragaria vesca
gene18499-v1.0-hybrid
N
0.921
PK21020.1
Cannabis sativa
PK21020.1
N
0.857
TCM_033446
Theobroma cacao
TCM_033446
N
0.820
cassava20476.m1
Manihot esculenta
cassava20476.m1
N
0.812
Gorai.002G110100
Gossypium raimondii
Gorai.002G110100
N
0.803
Ciclev10004715m.g
Citrus clementina
Ciclev10004715m.g
N
0.798
orange1.1g009215m.g
Citrus sinensis
orange1.1g009215m.g
N
0.798
POPTR_0005s09790
Populus trichocarpa
POPTR_0005s09790
N
0.795
evm.TU.supercontig_34.30
Carica papaya
evm.TU.supercontig_34.30
N
0.787
30169.m006306
Ricinus communis
30169.m006306
N
0.774
SapurV1A.0404s0280
Salix purpurea
SapurV1A.0404s0280
N
0.767
MTR_8g442410
Medicago truncatula
MTR_8g442410
N
0.738
VIT_19s0085g00540
Vitis vinifera
VIT_19s0085g00540
N
0.738
AMTR_s00004p00270570
Amborella trichopoda
AMTR_s00004p00270570
N
0.733
GLYMA15G28410
Glycine max
GLYMA15G28410
N
0.728
Eucgr.F04460
Eucalyptus grandis
Eucgr.F04460
N
0.725
Lus10031748.g
Linum usitatissimum
Lus10031748.g
N
0.724
PDK_20s1507561g001
Phoenix dactylifera
PDK_20s1507561g001
N
0.717
Ca_23936
Cicer arietinum
Ca_23936
N
0.711
Aquca_008_00025
Aquilegia coerulea
Aquca_008_00025
N
0.709