sob (Drosophila melanogaster)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0004892 T114421_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00		 Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1		 (Direct) (Direct)
sob
M03675_2.00		 Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2		 (Direct) (Direct)
sob
M06088_2.00		 Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892		 (Direct) (Direct)
sob
M06089_2.00		 Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.814 0.957
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.814 0.957
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.814 0.957
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.795 0.896
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.795 0.896
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.795 0.896
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.795 0.896
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0077247 C2H2 ZF 395 417
FBpp0077247 C2H2 ZF 423 445
FBpp0077247 C2H2 ZF 451 473
FBpp0077247 C2H2 ZF 479 501
FBpp0077247 C2H2 ZF 507 529

Links

Other C2H2 ZF family TFs
Other Drosophila melanogaster TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N
Ca_09696 Cicer arietinum Ca_09696 N
Ca_13855 Cicer arietinum Ca_13855 N
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N
Cucsa.120390 Cucumis sativus Cucsa.120390 N
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N
GLYMA14G01960 Glycine max GLYMA14G01960 N
GLYMA18G09030 Glycine max GLYMA18G09030 N
GLYMA02G46730 Glycine max GLYMA02G46730 N
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N
MDP0000205236 Malus domestica MDP0000205236 N
MDP0000284679 Malus domestica MDP0000284679 N
cassava10826.m1 Manihot esculenta cassava10826.m1 N
cassava34699.m1 Manihot esculenta cassava34699.m1 N
MTR_5g094450 Medicago truncatula MTR_5g094450 N
MTR_3g056110 Medicago truncatula MTR_3g056110 N
SCL5 Populus trichocarpa POPTR_0001s37270 N
Pm012019 Prunus mume Pm012019 N
27613.m000642 Ricinus communis 27613.m000642 N
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N
TCM_030733 Theobroma cacao TCM_030733 N
SCL5 Vitis vinifera VIT_19s0090g01740 N
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N