GM10780 (Drosophila sechellia)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0165726 T115972_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.827 1.000
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.827 1.000
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.827 1.000
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.827 1.000
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.827 1.000
ref-2
M00621_2.00 		Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089 		0.757 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0192257 C2H2 ZF 260 287
FBpp0192257 C2H2 ZF 293 317
FBpp0192257 C2H2 ZF 323 347
FBpp0192257 C2H2 ZF 353 377

Links

Other C2H2 ZF family TFs
Other Drosophila sechellia TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10028391m.g Capsella rubella Carubv10028391m.g I
Ca_12172 Cicer arietinum Ca_12172 I
Ca_02034 Cicer arietinum Ca_02034 I
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I
GLYMA20G35690 Glycine max GLYMA20G35690 I
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I
MLOC_18998 Hordeum vulgare MLOC_18998 I
LPERR02G24020 Leersia perrieri LPERR02G24020 I
Lus10015900.g Linum usitatissimum Lus10015900.g I
cassava39895.m1 Manihot esculenta cassava39895.m1 I
mgf026503m Mimulus guttatus mgf026503m I
mgf024641m Mimulus guttatus mgf024641m I
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I
OMERI02G28440 Oryza meridionalis OMERI02G28440 I
OPUNC02G27120 Oryza punctata OPUNC02G27120 I
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I
ZHD7 Oryza sativa OS02G0706600 D
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I
29983.m003297 Ricinus communis 29983.m003297 I
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I
Si020227m.g Setaria italica Si020227m.g I
Sb04g030480 Sorghum bicolor Sb04g030480 I
TCM_001660 Theobroma cacao TCM_001660 I
GRMZM2G069365 Zea mays GRMZM2G069365 I