Gfo_R012649 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R012649 T135847_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.825 0.991
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.825 0.991
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.825 0.991
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.825 0.991
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.825 0.991
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.825 0.991
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.825 0.991
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.825 0.991
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.825 0.991
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.825 0.991
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.821 0.982
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012649 C2H2 ZF 123 145
Gfo_R012649 C2H2 ZF 154 176
Gfo_R012649 C2H2 ZF 180 202
Gfo_R012649 C2H2 ZF 208 230
Gfo_R012649 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005266 Ailuropoda melanoleuca ENSAMEG00000005266 I 0.000
Alligator_sinensis_CCG008208.1 Alligator sinensis Alligator_sinensis_CCG008208.1 I 0.000
ENSAPLG00000016199 Anas platyrhynchos ENSAPLG00000016199 I 0.000
OVOL2 Anolis carolinensis ENSACAG00000014216 I 0.000
Afo_R007843 Aptenodytes forsteri Afo_R007843 I 0.000
ENSBTAP00000011067-D1 Bos grunniens ENSBTAP00000011067-D1 I 0.000
OVOL2 Bos taurus ENSBTAG00000008410 I 0.000
Brh_R002739 Buceros rhinoceros Brh_R002739 I 0.000
OVOL2 Canis familiaris ENSCAFG00000005453 I 0.000
ENSCPOG00000007912 Cavia porcellus ENSCPOG00000007912 I 0.000
Cmyd_10010114 Chelonia mydas Cmyd_10010114 I 0.000
ENSCSAG00000011547 Chlorocebus sabaeus ENSCSAG00000011547 I 0.000
Ovol2 Dipodomys ordii ENSDORG00000016697 I 0.000
OVOL2 Echinops telfairi ENSETEG00000006907 I 0.000
OVOL2 Equus caballus ENSECAG00000007899 I 0.000
OVOL2 Felis catus ENSFCAG00000027530 I 0.000
ENSFALG00000007594 Ficedula albicollis ENSFALG00000007594 I 0.000
OVOL2 Gallus gallus ENSGALG00000008702 I 0.000
Gfo_R008104 Geospiza fortis Gfo_R008104 I 0.000
OVOL2 Gorilla gorilla ENSGGOG00000024444 I 0.000
OVOL2 Homo sapiens ENSG00000125850 D 0.000
ENSSTOG00000024979 Ictidomys tridecemlineatus ENSSTOG00000024979 I 0.000
OVOL2 Loxodonta africana ENSLAFG00000010597 I 0.000
ENSP00000278780 Macaca fascicularis ENSP00000278780 I 0.000
ENSMMUG00000021621 Macaca mulatta ENSMMUG00000021621 I 0.000
ENSMEUG00000011922 Macropus eugenii ENSMEUG00000011922 I 0.000
ENSMGAG00000006770 Meleagris gallopavo ENSMGAG00000006770 I 0.000
ENSMICG00000017455 Microcebus murinus ENSMICG00000017455 I 0.000
OVOL2 Monodelphis domestica ENSMODG00000005504 I 0.000
ENSMPUG00000001295 Mustela putorius furo ENSMPUG00000001295 I 0.000
Ovol2 Mus musculus ENSMUSG00000037279 D 0.000
Myotis_brandtii_Ovol2_10029083 Myotis brandtii Myotis_brandtii_Ovol2_10029083 I 0.000
ENSMLUG00000026760 Myotis lucifugus ENSMLUG00000026760 I 0.000
ENSNLEG00000009741 Nomascus leucogenys ENSNLEG00000009741 I 0.000
OVOL2 Ochotona princeps ENSOPRG00000015054 I 0.000
Ogr08372 Ophisaurus gracilis Ogr08372 I 0.000
ENSOANG00000001250 Ornithorhynchus anatinus ENSOANG00000001250 I 0.000
OVOL2 Oryctolagus cuniculus ENSOCUG00000012116 I 0.000
OVOL2 Otolemur garnettii ENSOGAG00000030325 I 0.000
ENSOARG00000018244 Ovis aries ENSOARG00000018244 I 0.000
OVOL2 Pan troglodytes ENSPTRG00000013280 I 0.000
ENSPANG00000025538 Papio anubis ENSPANG00000025538 I 0.000
ENSPSIG00000006768 Pelodiscus sinensis ENSPSIG00000006768 I 0.000
Pvit_03654 Pogona vitticeps Pvit_03654 I 0.000
ENSPPYG00000010732 Pongo abelii ENSPPYG00000010732 I 0.000
OVOL2 Pteropus vampyrus ENSPVAG00000001140 I 0.000
Ovol2 Rattus norvegicus ENSRNOG00000006850 I 0.000
ENSSHAG00000018466 Sarcophilus harrisii ENSSHAG00000018466 I 0.000
ENSSARG00000006563 Sorex araneus ENSSARG00000006563 I 0.000
OVOL2 Taeniopygia guttata ENSTGUG00000005909 I 0.000
OVOL2 Tursiops truncatus ENSTTRG00000016430 I 0.000
Tal_R010801 Tyto alba Tal_R010801 I 0.000
ovol2 Xenopus tropicalis XB-GENE-854193 I 0.000