Myotis_brandtii_Snai2_10018131 (Myotis brandtii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Myotis_brandtii_Snai2_10018131 T136119_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.827 1.000
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.827 1.000
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.827 1.000
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.827 1.000
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.827 1.000
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.827 1.000
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.827 1.000
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.827 1.000
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.827 1.000
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.827 1.000
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.827 1.000
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.827 1.000
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.823 0.991
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_Snai2_10018131 C2H2 ZF 128 150
Myotis_brandtii_Snai2_10018131 C2H2 ZF 159 181
Myotis_brandtii_Snai2_10018131 C2H2 ZF 185 207
Myotis_brandtii_Snai2_10018131 C2H2 ZF 213 235
Myotis_brandtii_Snai2_10018131 C2H2 ZF 241 262

Links

Other C2H2 ZF family TFs
Other Myotis brandtii TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_27111 Aegilops tauschii F775_27111 I 0.000
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I 0.000
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.000
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.000
OBART09G16810 Oryza barthii OBART09G16810 I 0.000
OBART09G16830 Oryza barthii OBART09G16830 I 0.000
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.000
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.000
DREB1A Oryza indica BGIOSGA029415 I 0.000
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.000
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.000
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.000
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.000
DREB1A Oryza sativa OS09G0522200 D 0.000
Pavir.J27101 Panicum virgatum Pavir.J27101 I 0.000
Pavir.J03893 Panicum virgatum Pavir.J03893 I 0.000
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.000
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.000
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I 0.000
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I 0.000
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I 0.000
Si031001m.g Setaria italica Si031001m.g I 0.000
Si030998m.g Setaria italica Si030998m.g I 0.000
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.000
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.000
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.000
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.000
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.000
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.000
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.000
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.000
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.000
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.000
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.000