Carubv10001868m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10001868m.g T142693_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.822 0.957
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.815 0.891
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.815 0.891
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.815 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.792 0.870
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.792 0.870
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001868m C2H2 ZF 91 113
Carubv10001868m C2H2 ZF 146 168

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI007518 Acyrthosiphon pisum ACYPI007518 I 0.000
ACYPI008391 Acyrthosiphon pisum ACYPI008391 I 0.000
AAEL007453 Aedes aegypti AAEL007453 I 0.000
AAEL008961 Aedes aegypti AAEL008961 I 0.000
ENSAMEG00000000519 Ailuropoda melanoleuca ENSAMEG00000000519 I 0.000
AATE001257 Anopheles atroparvus AATE001257 I 0.000
ACOM030727 Anopheles coluzzii ACOM030727 I 0.000
ADAC005347 Anopheles darlingi ADAC005347 I 0.000
ADAC010373 Anopheles darlingi ADAC010373 I 0.000
AEPI004813 Anopheles epiroticus AEPI004813 I 0.000
AFAF004720 Anopheles farauti AFAF004720 I 0.000
AFUN006320 Anopheles funestus AFUN006320 I 0.000
ODR1 Anopheles gambiae AGAP007973 I 0.000
ODR2 Anopheles gambiae AGAP008222 I 0.000
AMEM017192 Anopheles merus AMEM017192 I 0.000
AMIN006295 Anopheles minimus AMIN006295 I 0.000
ASTEI01738 Anopheles stephensi ASTEI01738 I 0.000
GB49901 Apis mellifera GB49901 I 0.000
GB49914 Apis mellifera GB49914 I 0.000
ACEP20577 Atta cephalotes ACEP20577 I 0.000
ACEP20581 Atta cephalotes ACEP20581 I 0.000
estExt_fgenesh2_pg.C_1600105 Branchiostoma floridae estExt_fgenesh2_pg.C_1600105 I 0.000
estExt_fgenesh2_pg.C_1600113 Branchiostoma floridae estExt_fgenesh2_pg.C_1600113 I 0.000
fgenesh2_pg.scaffold_160000107 Branchiostoma floridae fgenesh2_pg.scaffold_160000107 I 0.000
fgenesh2_pg.scaffold_160000114 Branchiostoma floridae fgenesh2_pg.scaffold_160000114 I 0.000
OSR2 Callithrix jacchus ENSCJAG00000015627 I 0.000
Cflo_02188--XP_001120905.1_APIME Camponotus floridanus Cflo_02188--XP_001120905.1_APIME I 0.000
Cflo_02191--XP_393879.3_APIME Camponotus floridanus Cflo_02191--XP_393879.3_APIME I 0.000
OSR2 Canis familiaris ENSCAFG00000000493 I 0.000
CpipJ_CPIJ010652 Culex pipiens CpipJ_CPIJ010652 I 0.000
CPIJ010652 Culex quinquefasciatus CPIJ010652 I 0.000
KGM_20290 Danaus plexippus KGM_20290 I 0.000
DAPPUDRAFT_238529 Daphnia pulex DAPPUDRAFT_238529 I 0.000
DAPPUDRAFT_347540 Daphnia pulex DAPPUDRAFT_347540 I 0.000
YQE_05719 Dendroctonus ponderosae YQE_05719 I 0.000
Osr2 Dipodomys ordii ENSDORG00000011823 I 0.000
GF14663 Drosophila ananassae FBgn0091690 I 0.000
GF15254 Drosophila ananassae FBgn0092279 I 0.000
GG24427 Drosophila erecta FBgn0116559 I 0.000
GG24967 Drosophila erecta FBgn0117096 I 0.000
GH13192 Drosophila grimshawi FBgn0120669 I 0.000
GH13710 Drosophila grimshawi FBgn0121186 I 0.000
sob Drosophila melanogaster FBgn0004892 D 0.000
bowl Drosophila melanogaster FBgn0004893 D 0.000
GI17769 Drosophila mojavensis FBgn0140510 I 0.000
GI23940 Drosophila mojavensis FBgn0146665 I 0.000
GL18676 Drosophila persimilis FBgn0156277 I 0.000
GL19470 Drosophila persimilis FBgn0157069 I 0.000
GA10014 Drosophila pseudoobscura FBgn0070073 I 0.000
GA25976 Drosophila pseudoobscura FBgn0247353 I 0.000
GM18136 Drosophila sechellia FBgn0173043 I 0.000
GM18435 Drosophila sechellia FBgn0173342 I 0.000
GD22744 Drosophila simulans FBgn0194140 I 0.000
GD23254 Drosophila simulans FBgn0194642 I 0.000
GJ17594 Drosophila virilis FBgn0204764 I 0.000
GJ21213 Drosophila virilis FBgn0208346 I 0.000
GK14650 Drosophila willistoni FBgn0216656 I 0.000
GK15478 Drosophila willistoni FBgn0217483 I 0.000
GE14841 Drosophila yakuba FBgn0232433 I 0.000
GE18258 Drosophila yakuba FBgn0235686 I 0.000
OSR2 Equus caballus ENSECAG00000017784 I 0.000
OSR2 Erinaceus europaeus ENSEEUG00000008304 I 0.000
ENSFALG00000005731 Ficedula albicollis ENSFALG00000005731 I 0.000
ENSGALG00000016016 Gallus gallus ENSGALG00000016016 I 0.000
OSR2 Gorilla gorilla ENSGGOG00000006716 I 0.000
OSR2 Homo sapiens ENSG00000164920 D 0.000
ISCW005884 Ixodes scapularis ISCW005884 I 0.000
ISCW017921 Ixodes scapularis ISCW017921 I 0.000
LCUP002070 Lucilia cuprina LCUP002070 I 0.000
LCUP002077 Lucilia cuprina LCUP002077 I 0.000
ENSMMUP00000029201 Macaca fascicularis ENSMMUP00000029201 I 0.000
OSR2 Macaca mulatta ENSMMUG00000022185 I 0.000
MCINX006060 Melitaea cinxia MCINX006060 I 0.000
OSR2 Microcebus murinus ENSMICG00000004390 I 0.000
MDOA005526 Musca domestica MDOA005526 I 0.000
MDOA011451 Musca domestica MDOA011451 I 0.000
NV12185 Nasonia vitripennis NV12185 I 0.000
NV12189 Nasonia vitripennis NV12189 I 0.000
ENSNLEG00000002725 Nomascus leucogenys ENSNLEG00000002725 I 0.000
OSR2 Ochotona princeps ENSOPRG00000005325 I 0.000
ENSONIG00000006859 Oreochromis niloticus ENSONIG00000006859 I 0.000
osr2 Oryzias latipes ENSORLG00000002797 I 0.000
OSR2 Otolemur garnettii ENSOGAG00000007928 I 0.000
ENSOARG00000002902 Ovis aries ENSOARG00000002902 I 0.000
OSR2 Pan troglodytes ENSPTRG00000020463 I 0.000
PHUM125070 Pediculus humanus PHUM125070 I 0.000
PHUM125080 Pediculus humanus PHUM125080 I 0.000
PHUM445550 Pediculus humanus PHUM445550 I 0.000
ENSPPYG00000018781 Pongo abelii ENSPPYG00000018781 I 0.000
OSR2 Procavia capensis ENSPCAG00000003419 I 0.000
OSR2 Pteropus vampyrus ENSPVAG00000004363 I 0.000
Sakowv30016612m.g Saccoglossus kowalevskii Sakowv30016612m.g I 0.000
ENSSHAG00000007793 Sarcophilus harrisii ENSSHAG00000007793 I 0.000
SINV17987 Solenopsis invicta SINV17987 I 0.000
SINV18115 Solenopsis invicta SINV18115 I 0.000
SMAR002904 Strigamia maritima SMAR002904 I 0.000
SMAR005255 Strigamia maritima SMAR005255 I 0.000
SPU_024877 Strongylocentrotus purpuratus SPU_024877 I 0.000
osr2 Takifugu rubripes ENSTRUG00000011070 I 0.000
ENSTSYG00000013426 Tarsius syrichta ENSTSYG00000013426 I 0.000
tetur09g03230 Tetranychus urticae tetur09g03230 I 0.000
TC005784 Tribolium castaneum TC005784 I 0.000
TC005788 Tribolium castaneum TC005788 I 0.000
D917_03163 Trichinella nativa D917_03163 I 0.000
D917_07818 Trichinella nativa D917_07818 I 0.000
EFV49300 Trichinella spiralis EFV49300 I 0.000
OSR2 Tursiops truncatus ENSTTRG00000007477 I 0.000
XP_002934454 Xenopus tropicalis XP_002934454 I 0.000
L798_02529 Zootermopsis nevadensis L798_02529 I 0.000
L798_02536 Zootermopsis nevadensis L798_02536 I 0.000