znf238.2.L (Xenopus laevis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-1219070 T145394_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.768 0.901
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.768 0.901
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.768 0.901
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.768 0.901
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.768 0.901
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.768 0.901
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.768 0.901
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.768 0.901
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.768 0.901
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH46572 C2H2 ZF 373 395
AAH46572 C2H2 ZF 414 435
AAH46572 C2H2 ZF 441 463
AAH46572 C2H2 ZF 469 492

Links

Other C2H2 ZF family TFs
Other Xenopus laevis TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00917 Aegilops tauschii F775_00917 I
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N
ZFP11 Arabidopsis thaliana AT2G42410 I
SUP Arabidopsis thaliana AT3G23130 I
RBE Arabidopsis thaliana AT5G06070 D
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I
Bo1g102390 Brassica oleracea Bo1g102390 I
Bo3g003640 Brassica oleracea Bo3g003640 I
Bo7g065530 Brassica oleracea Bo7g065530 N
Bo9g059250 Brassica oleracea Bo9g059250 N
Bo9g176590 Brassica oleracea Bo9g176590 I
Bra005874 Brassica rapa Bra005874 I
Bra009160 Brassica rapa Bra009160 I
Bra023759 Brassica rapa Bra023759 I
Bra027500 Brassica rapa Bra027500 N
Bra033683 Brassica rapa Bra033683 N
PK22236.1 Cannabis sativa PK22236.1 N
Cagra.19122s0001 Capsella grandiflora Cagra.19122s0001 N
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I
Carubv10002935m.g Capsella rubella Carubv10002935m.g I
Carubv10016073m.g Capsella rubella Carubv10016073m.g I
Carubv10024766m.g Capsella rubella Carubv10024766m.g I
Carubv10028256m.g Capsella rubella Carubv10028256m.g N
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I
Cla006093 Citrullus lanatus Cla006093 N
Cla008348 Citrullus lanatus Cla008348 N
Cla021877 Citrullus lanatus Cla021877 N
Ciclev10006751m.g Citrus clementina Ciclev10006751m.g N
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N
Cucsa.016990 Cucumis sativus Cucsa.016990 N
Cucsa.117650 Cucumis sativus Cucsa.117650 N
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N
GLYMA07G16290 Glycine max GLYMA07G16290 I
GLYMA10G32810 Glycine max GLYMA10G32810 N
GLYMA12G06340 Glycine max GLYMA12G06340 N
GLYMA20G34840 Glycine max GLYMA20G34840 N
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I
MLOC_76482 Hordeum vulgare MLOC_76482 I
LPERR05G08090 Leersia perrieri LPERR05G08090 I
LPERR07G09750 Leersia perrieri LPERR07G09750 N
Lus10021213.g Linum usitatissimum Lus10021213.g I
Lus10022204.g Linum usitatissimum Lus10022204.g I
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I
MDP0000143134 Malus domestica MDP0000143134 N
MDP0000225209 Malus domestica MDP0000225209 I
cassava14614.m1 Manihot esculenta cassava14614.m1 I
cassava32634.m1 Manihot esculenta cassava32634.m1 N
cassava3359.m1 Manihot esculenta cassava3359.m1 I
cassava40050.m1 Manihot esculenta cassava40050.m1 I
cassava4410.m1 Manihot esculenta cassava4410.m1 N
MTR_1g070250 Medicago truncatula MTR_1g070250 N
MTR_1g070265 Medicago truncatula MTR_1g070265 I
MTR_1g075430 Medicago truncatula MTR_1g075430 N
MTR_4g064873 Medicago truncatula MTR_4g064873 N
MTR_7g063220 Medicago truncatula MTR_7g063220 I
mgf024356m Mimulus guttatus mgf024356m I
GSMUA_Achr11G02150_001 Musa acuminata GSMUA_Achr11G02150_001 N
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N
OBART05G10090 Oryza barthii OBART05G10090 I
OBART07G11660 Oryza barthii OBART07G11660 N
OBART11G23770 Oryza barthii OBART11G23770 I
OB05G18710 Oryza brachyantha OB05G18710 I
OB07G18110 Oryza brachyantha OB07G18110 N
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I
BGIOSGA018378 Oryza indica BGIOSGA018378 I
BGIOSGA025569 Oryza indica BGIOSGA025569 N
BGIOSGA033510 Oryza indica BGIOSGA033510 I
OLONG_005038 Oryza longistaminata OLONG_005038 I
OLONG_012182 Oryza longistaminata OLONG_012182 N
OLONG_023754 Oryza longistaminata OLONG_023754 I
OMERI07G13080 Oryza meridionalis OMERI07G13080 I
ONIVA06G26970 Oryza nivara ONIVA06G26970 I
ONIVA07G09630 Oryza nivara ONIVA07G09630 N
ONIVA07G09640 Oryza nivara ONIVA07G09640 N
ONIVA11G23290 Oryza nivara ONIVA11G23290 I
OPUNC05G08760 Oryza punctata OPUNC05G08760 I
OPUNC07G10480 Oryza punctata OPUNC07G10480 N
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I
OS05G0286100 Oryza sativa OS05G0286100 I
OS07G0417400 Oryza sativa OS07G0417400 N
OS11G0707300 Oryza sativa OS11G0707300 I
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I
Pm002649 Prunus mume Pm002649 N
Pm009419 Prunus mume Pm009419 N
Pm009420 Prunus mume Pm009420 I
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I
PRUPE_ppa016491mg Prunus persica PRUPE_ppa016491mg N
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N
28345.m000111 Ricinus communis 28345.m000111 N
29603.m000536 Ricinus communis 29603.m000536 I
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I
Si019050m.g Setaria italica Si019050m.g I
Si024070m.g Setaria italica Si024070m.g I
Si032478m.g Setaria italica Si032478m.g I
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I
Sb02g009930 Sorghum bicolor Sb02g009930 I
TCM_020819 Theobroma cacao TCM_020819 N
TCM_021875 Theobroma cacao TCM_021875 I
TCM_021876 Theobroma cacao TCM_021876 N
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I
TRIUR3_03721 Triticum urartu TRIUR3_03721 I
TRIUR3_04794 Triticum urartu TRIUR3_04794 I
TRIUR3_25222 Triticum urartu TRIUR3_25222 I
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N
GRMZM2G409452 Zea mays GRMZM2G409452 I