bcl11a (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-486641 T145431_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.827 0.982
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.827 0.982
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.827 0.982
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.806 0.947
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI23945 C2H2 ZF 345 366
AAI23945 C2H2 ZF 372 394
AAI23945 C2H2 ZF 704 726
AAI23945 C2H2 ZF 732 754
AAI23945 C2H2 ZF 762 785

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.000
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.000
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.000
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.000
AGL51 Arabidopsis thaliana AT4G02235 I 0.000
AGL78 Arabidopsis thaliana AT5G65330 D 0.000
AGL75 Arabidopsis thaliana AT5G41200 I 0.000
AGL76 Arabidopsis thaliana AT5G40120 I 0.000
AGL98 Arabidopsis thaliana AT5G39810 I 0.000
AGL81 Arabidopsis thaliana AT5G39750 I 0.000
AGL77 Arabidopsis thaliana AT5G38740 I 0.000
AGL52 Arabidopsis thaliana AT4G11250 I 0.000
AGL43 Arabidopsis thaliana AT5G40220 I 0.000
Bostr.3751s0025 Boechera stricta Bostr.3751s0025 I 0.000
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.000
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.000
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.000
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.000
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.000
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.000
Bo00615s090 Brassica oleracea Bo00615s090 I 0.000
Bra031864 Brassica rapa Bra031864 I 0.000
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.000
Carubv10007456m.g Capsella rubella Carubv10007456m.g I 0.000
Carubv10015354m.g Capsella rubella Carubv10015354m.g I 0.000
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.000
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.000