PTRK_0000952000 (Parastrongyloides trichosuri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PTRK_0000952000 T155744_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
klu
M03680_2.00 		Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD		 SELEX
Nitta et al.(2015)
klu_1 		0.760 0.772
klu
M03681_2.00 		Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR		 SELEX
Nitta et al.(2015)
klu_2 		0.760 0.772
klu
M06114_2.00 		Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK		 B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469 		0.760 0.772
klu
M06115_2.00 		Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN		 B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469 		0.760 0.772
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0000952000.1 C2H2 ZF 605 628
PTRK_0000952000.1 C2H2 ZF 644 666
PTRK_0000952000.1 C2H2 ZF 672 694
PTRK_0000952000.1 C2H2 ZF 700 722

Links

Other C2H2 ZF family TFs
Other Parastrongyloides trichosuri TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I 0.782
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I 0.788
ASU_11043 Ascaris suum ASU_11043 I 0.779
Bm9026 Brugia malayi Bm9026 I 0.782
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I 0.763
CBN12312 Caenorhabditis brenneri CBN12312 I
CBN30915 Caenorhabditis brenneri CBN30915 I
CBG19812 Caenorhabditis briggsae CBG19812 I
CJA16091 Caenorhabditis japonica CJA16091 I
CRE13956 Caenorhabditis remanei CRE13956 I
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I 0.788
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I 0.779
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I 0.782
HCOI02146900 Haemonchus contortus HCOI02146900 I 0.788
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I 0.782
LOAG_17546 Loa loa LOAG_17546 I 0.782
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I 0.766
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I 0.766
WBGene00248644 Onchocerca volvulus WBGene00248644 I 0.782
L596_g19227 Steinernema carpocapsae L596_g19227 I 0.779
L898_g5287 Steinernema monticolum L898_g5287 I 0.779
L892_g30369 Steinernema scapterisci L892_g30369 I 0.779
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I 0.822
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I 0.822