CBN18838 (Caenorhabditis brenneri)
C2HC ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01530 (zf-C2HC) IPR002515 CBN18838 T158867_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ztf-11
M00650_2.00 		Caenorhabditis elegans
VAAGTTTN
NAAACTTB		 PBM
Narasimhan et al.(2015)
pTH9925 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN18838 C2HC ZF 280 307
CBN18838 C2HC ZF 326 354

Links

Other C2HC ZF family TFs
Other Caenorhabditis brenneri TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20285 Aegilops tauschii F775_20285 I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
APRR2 Arabidopsis thaliana AT4G18020 D
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bo1g019180 Brassica oleracea Bo1g019180 I
Bra012623 Brassica rapa Bra012623 I
Bra013277 Brassica rapa Bra013277 I
Bra013278 Brassica rapa Bra013278 I
Bra013279 Brassica rapa Bra013279 I
Bra036015 Brassica rapa Bra036015 I
PK19826.1 Cannabis sativa PK19826.1 I
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I
Carubv10004540m.g Capsella rubella Carubv10004540m.g I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
Ca_24009 Cicer arietinum Ca_24009 I
Ca_12825 Cicer arietinum Ca_12825 I
Ca_02285 Cicer arietinum Ca_02285 I
Cla008926 Citrullus lanatus Cla008926 I
Cla016403 Citrullus lanatus Cla016403 I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
Cucsa.313480 Cucumis sativus Cucsa.313480 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
GLYMA05G06070 Glycine max GLYMA05G06070 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA01G40900 Glycine max GLYMA01G40900 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I
MLOC_43537 Hordeum vulgare MLOC_43537 I
LPERR06G12880 Leersia perrieri LPERR06G12880 I
Lus10040109.g Linum usitatissimum Lus10040109.g I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10003013.g Linum usitatissimum Lus10003013.g I
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
MDP0000248863 Malus domestica MDP0000248863 I
MDP0000237396 Malus domestica MDP0000237396 I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I
MTR_5g014040 Medicago truncatula MTR_5g014040 I
MTR_4g098870 Medicago truncatula MTR_4g098870 I
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I
OBART03G02540 Oryza barthii OBART03G02540 I
OB06G22250 Oryza brachyantha OB06G22250 I
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I
BGIOSGA022875 Oryza indica BGIOSGA022875 I
OMERI06G15340 Oryza meridionalis OMERI06G15340 I
ONIVA06G16920 Oryza nivara ONIVA06G16920 I
OPUNC06G13180 Oryza punctata OPUNC06G13180 I
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I
GLK1 Oryza sativa OS06G0348800 I
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I
Pm014733 Prunus mume Pm014733 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
30054.m000786 Ricinus communis 30054.m000786 I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
Si006400m.g Setaria italica Si006400m.g I
Si001336m.g Setaria italica Si001336m.g I
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I
Sb10g008400 Sorghum bicolor Sb10g008400 I
Sb03g000400 Sorghum bicolor Sb03g000400 I
TCM_015780 Theobroma cacao TCM_015780 I
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I
APRR2 Vitis vinifera VIT_02s0012g00570 I
GRMZM2G087804 Zea mays GRMZM2G087804 I