CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Si030774m.g *(Setaria italica)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02701 (zf-Dof)	IPR003851	Si030774m.g	T171174_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.948	0.948
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.948	0.948
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.948	0.948
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.897	0.897
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.897	0.897
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.759	0.759
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.759	0.759
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.759	0.759
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.759	0.759
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.759	0.759
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.759	0.759
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.759	0.759
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.759	0.759
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.759	0.759
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.741	0.741
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.741	0.741
DOF5.8 M06868_2.00	Arabidopsis thaliana	HHNHHYHHHHYTTTHNCTTTTKNNHHNHW	WDNDDNNMAAAAGNDAAARDDDDRDDNDD	Dap-seq OMalley et al.(2016) AT5G66940_col_a	0.741	0.741
DOF5.8 M06869_2.00	Arabidopsis thaliana	NNHNDYWRCTTTTTNNHYHNH	DNDRDNNAAAAAGYWRHNDNN	Dap-seq OMalley et al.(2016) AT5G66940_colamp_a	0.741	0.741
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.724	0.724
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.724	0.724
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.724	0.724
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.707	0.707
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.707	0.707
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.707	0.707
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.707	0.707
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.707	0.707
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.707	0.707
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.707	0.707
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.707	0.707
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.707	0.707
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.707	0.707
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.707	0.707
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.707	0.707
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.707	0.707
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.707	0.707
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.707	0.707
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.707	0.707
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.707	0.707
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.707	0.707
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.690	0.690
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.690	0.690
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.690	0.690
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.690	0.690
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.690	0.690
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.690	0.690
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.690	0.690
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.690	0.690
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.690	0.690
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.690	0.690
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.690	0.690
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.690	0.690
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.690	0.690
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.690	0.690
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.690	0.690
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.690	0.690
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.690	0.690
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.690	0.690
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.690	0.690
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.690	0.690
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.672	0.672
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.672	0.672
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.672	0.672
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.672	0.672
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.672	0.672
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.672	0.672
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.672	0.672
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.672	0.672
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.672	0.672
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.655	0.655
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.655	0.655
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.655	0.655
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.655	0.655
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.655	0.655
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.655	0.655
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.655	0.655
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.638	0.638
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.638	0.638
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.638	0.638
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.603	0.603
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.603	0.603
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.586	0.586
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.586	0.586
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	0.552	0.552
DOF4.2 M06856_2.00	Arabidopsis thaliana	NNHWWWRCCTTTTTNNHNH	DNDNNAAAAAGGYWWWDNN	Dap-seq OMalley et al.(2016) dof42_col_a	0.517	0.517
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Si030774m	Dof	48	105	AGDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSS

Links
Other Dof family TFs
Other *Setaria italica* TFs

1970 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
orange1.1g031906m.g	Citrus sinensis	orange1.1g031906m.g	I	0.000
W97_04494	Coniosporium apollinis	W97_04494	I	0.000
GPLIN_000847800	Globodera pallida	GPLIN_000847800	N	0.000
Gorai.002G115100	Gossypium raimondii	Gorai.002G115100	I	0.000
MLOC_68913	Hordeum vulgare	MLOC_68913	N	0.000
TTAC_0000838901	Hydatigera taeniaeformis	TTAC_0000838901	N	0.000
LEMA_P074670.1	Leptosphaeria maculans	LEMA_P074670.1	I	0.000
LCUP018488	Lucilia cuprina	LCUP018488	N	0.000
MDP0000242568	Malus domestica	MDP0000242568	I	0.000
fgenesh1_pg.C_chr_1000979	Mycosphaerella graminicola	fgenesh1_pg.C_chr_1000979	N	0.000
EFA77534.1	Polysphondylium pallidum	EFA77534.1	N	0.000
SapurV1A.0237s0190	Salix purpurea	SapurV1A.0237s0190	N	0.000
D917_01243	Trichinella nativa	D917_01243	N	0.000
D917_08464	Trichinella nativa	D917_08464	N	0.000
Traes_7BL_F45C15FA2	Triticum aestivum	Traes_7BL_F45C15FA2	N	0.000
Mycgr3G89562	Zymoseptoria tritici	Mycgr3G89562	N	0.000

Si030774m.g (Setaria italica) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1970 Related TFs

Si030774m.g **(Setaria italica)
Dof**