ONIVA06G05110 (Oryza nivara)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 ONIVA06G05110 T173351_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.743 0.743
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.743 0.743
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.743 0.743
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.632 0.632
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.632 0.632
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.632 0.632
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.632 0.632
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.581 0.581
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.581 0.581
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.581 0.581
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.581 0.581
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.581 0.581
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.581 0.581
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.574 0.574
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.574 0.574
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.574 0.574
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA06G05110.1 E2F 55 119
ONIVA06G05110.1 E2F 178 257

Links

Other E2F family TFs
Other Oryza nivara TFs

329 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_AGL073CA Ashbya gossypii AGOS_AGL073CA I
CAGL0L02013g Candida glabrata CAGL0L02013g I
Ecym_7252 Eremothecium cymbalariae Ecym_7252 I
KAFR_0J00330 Kazachstania africana KAFR_0J00330 I
KNAG_0A07060 Kazachstania naganishii KNAG_0A07060 I
KLTH0D06908g Kluyveromyces thermotolerans KLTH0D06908g I
Kwal_8043 Kluyveromyces waltii Kwal_8043 I
SAKL0A09548g Lachancea kluyveri SAKL0A09548g I
LALA0_S02e01376g Lachancea lanzarotensis LALA0_S02e01376g I
KLTH0D06908g Lachancea thermotolerans KLTH0D06908g I
NCAS_0A04790 Naumovozyma castellii NCAS_0A04790 I
NDAI_0K01850 Naumovozyma dairenensis NDAI_0K01850 I
SU7_2018 Saccharomyces arboricola SU7_2018 I
14658_YKL032C Saccharomyces bayanus 14658_YKL032C I
IXR1 Saccharomyces cerevisiae YKL032C D
13553_YKL032C Saccharomyces mikatae 13553_YKL032C I
13606_Multiple Saccharomyces paradoxus 13606_Multiple I
AACERI_AaceriAGL073CA Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL073CA I
TBLA_0G02260 Tetrapisispora blattae TBLA_0G02260 I
TPHA_0G03540 Tetrapisispora phaffii TPHA_0G03540 I
TDEL_0A03100 Torulaspora delbrueckii TDEL_0A03100 I
Kpol_348p11 Vanderwaltozyma polyspora Kpol_348p11 I
ZBAI_09505 Zygosaccharomyces bailii ZBAI_09505 I
ZBAI_03824 Zygosaccharomyces bailii ZBAI_03824 I
ZYRO0B02068g Zygosaccharomyces rouxii ZYRO0B02068g I