30106.m000672 (Ricinus communis)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 30106.m000672 T181019_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.909 0.909
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.909 0.909
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.727 0.727
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30106.m000672 FAR1 76 163

Links

Other FAR1 family TFs
Other Ricinus communis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000278 Ailuropoda melanoleuca ENSAMEG00000000278 I
ENSAMEG00000011320 Ailuropoda melanoleuca ENSAMEG00000011320 I
Alligator_sinensis_CCG017490.1 Alligator sinensis Alligator_sinensis_CCG017490.1 I
ENSAPLG00000002882 Anas platyrhynchos ENSAPLG00000002882 I
ENSAPLG00000008667 Anas platyrhynchos ENSAPLG00000008667 I
GRHL1 Anolis carolinensis ENSACAG00000000132 I
GRHL2 Anolis carolinensis ENSACAG00000008759 I
Afo_R015753 Aptenodytes forsteri Afo_R015753 I
ENSP00000251808-D1 Bos grunniens ENSP00000251808-D1 I
ENSP00000384209-D1 Bos grunniens ENSP00000384209-D1 I
GRHL2 Bos taurus ENSBTAG00000004518 I
GRHL1 Bos taurus ENSBTAG00000007485 I
Brh_R003016 Buceros rhinoceros Brh_R003016 I
GRHL1 Callithrix jacchus ENSCJAG00000006431 I
GRHL2 Callithrix jacchus ENSCJAG00000015886 I
Aan_R015393 Calypte anna Aan_R015393 I
GRHL2 Canis familiaris ENSCAFG00000000587 I
GRHL1 Canis familiaris ENSCAFG00000003394 I
GRHL2 Cavia porcellus ENSCPOG00000005630 I
GRHL1 Cavia porcellus ENSCPOG00000010783 I
Cmyd_10003336 Chelonia mydas Cmyd_10003336 I
ENSCSAG00000007158 Chlorocebus sabaeus ENSCSAG00000007158 I
ENSCSAG00000011989 Chlorocebus sabaeus ENSCSAG00000011989 I
grhl1 Danio rerio ENSDARG00000061391 I
grhl2b Danio rerio ENSDARG00000061974 I
GRHL1 Dasypus novemcinctus ENSDNOG00000014493 I
GRHL2 Dasypus novemcinctus ENSDNOG00000048641 I
GRHL2 Equus caballus ENSECAG00000013681 I
GRHL1 Equus caballus ENSECAG00000015969 I
GRHL2 Erinaceus europaeus ENSEEUG00000015263 I
GRHL2 Felis catus ENSFCAG00000004963 I
GRHL1 Felis catus ENSFCAG00000007856 I
ENSFALG00000006639 Ficedula albicollis ENSFALG00000006639 I
ENSGMOG00000003256 Gadus morhua ENSGMOG00000003256 I
ENSGALG00000014208 Gallus gallus ENSGALG00000014208 I
ENSGALG00000016439 Gallus gallus ENSGALG00000016439 I
grhl1 Gasterosteus aculeatus ENSGACG00000008845 I
Gfo_R006019 Geospiza fortis Gfo_R006019 I
Gfo_R015266 Geospiza fortis Gfo_R015266 I
GRHL1 Gorilla gorilla ENSGGOG00000002692 I
GRHL2 Homo sapiens ENSG00000083307 D
GRHL1 Homo sapiens ENSG00000134317 D
ENSSTOG00000001498 Ictidomys tridecemlineatus ENSSTOG00000001498 I
ENSSTOG00000002434 Ictidomys tridecemlineatus ENSSTOG00000002434 I
ENSSTOG00000019842 Ictidomys tridecemlineatus ENSSTOG00000019842 I
ENSLACG00000006172 Latimeria chalumnae ENSLACG00000006172 I
ENSLOCG00000016835 Lepisosteus oculatus ENSLOCG00000016835 I
GRHL1 Loxodonta africana ENSLAFG00000009330 I
GRHL2 Loxodonta africana ENSLAFG00000010356 I
ENSMMUP00000002046 Macaca fascicularis ENSMMUP00000002046 I
ENSP00000379261 Macaca fascicularis ENSP00000379261 I
GRHL1 Macaca mulatta ENSMMUG00000001535 I
GRHL2 Macaca mulatta ENSMMUG00000020995 I
GRHL2 Meleagris gallopavo ENSMGAG00000012259 I
GRHL1 Meleagris gallopavo ENSMGAG00000014007 I
GRHL2 Microcebus murinus ENSMICG00000014771 I
GRHL2 Monodelphis domestica ENSMODG00000006048 I
GRHL1 Monodelphis domestica ENSMODG00000014753 I
ENSMPUG00000013263 Mustela putorius furo ENSMPUG00000013263 I
ENSMPUG00000015153 Mustela putorius furo ENSMPUG00000015153 I
Grhl1 Mus musculus ENSMUSG00000020656 I
Grhl2 Mus musculus ENSMUSG00000022286 D
Myotis_brandtii_GRHL1_10020834 Myotis brandtii Myotis_brandtii_GRHL1_10020834 I
Myotis_brandtii_GRHL2_10032153 Myotis brandtii Myotis_brandtii_GRHL2_10032153 I
GRHL1 Myotis lucifugus ENSMLUG00000002290 I
GRHL2 Myotis lucifugus ENSMLUG00000010961 I
ENSNLEG00000003271 Nomascus leucogenys ENSNLEG00000003271 I
ENSNLEG00000013634 Nomascus leucogenys ENSNLEG00000013634 I
Ogr04284 Ophisaurus gracilis Ogr04284 I
ENSONIG00000002710 Oreochromis niloticus ENSONIG00000002710 I
ENSONIG00000003707 Oreochromis niloticus ENSONIG00000003707 I
GRHL2 Ornithorhynchus anatinus ENSOANG00000004305 I
GRHL2 Oryctolagus cuniculus ENSOCUG00000004750 I
GRHL1 Oryctolagus cuniculus ENSOCUG00000017717 I
grhl1 Oryzias latipes ENSORLG00000015232 I
GRHL2 Otolemur garnettii ENSOGAG00000004751 I
GRHL1 Otolemur garnettii ENSOGAG00000014342 I
ENSOARG00000015298 Ovis aries ENSOARG00000015298 I
ENSOARG00000018325 Ovis aries ENSOARG00000018325 I
GRHL1 Pan troglodytes ENSPTRG00000011643 I
GRHL2 Pan troglodytes ENSPTRG00000020479 I
ENSPANG00000017807 Papio anubis ENSPANG00000017807 I
ENSPANG00000020814 Papio anubis ENSPANG00000020814 I
ENSPSIG00000003669 Pelodiscus sinensis ENSPSIG00000003669 I
ENSPSIG00000010930 Pelodiscus sinensis ENSPSIG00000010930 I
ENSPMAG00000005869 Petromyzon marinus ENSPMAG00000005869 I
ENSPMAG00000005876 Petromyzon marinus ENSPMAG00000005876 I
ENSPFOG00000004774 Poecilia formosa ENSPFOG00000004774 I
ENSPFOG00000006095 Poecilia formosa ENSPFOG00000006095 I
Pvit_03833 Pogona vitticeps Pvit_03833 I
Pvit_14440 Pogona vitticeps Pvit_14440 I
ENSPPYG00000012661 Pongo abelii ENSPPYG00000012661 I
GRHL1 Pteropus vampyrus ENSPVAG00000002002 I
Grhl2 Rattus norvegicus ENSRNOG00000007000 I
Grhl1 Rattus norvegicus ENSRNOG00000054989 I
ENSSHAG00000002291 Sarcophilus harrisii ENSSHAG00000002291 I
ENSSHAG00000015849 Sarcophilus harrisii ENSSHAG00000015849 I
GRHL2 Sus scrofa ENSSSCG00000006060 I
ENSTGUG00000012086 Taeniopygia guttata ENSTGUG00000012086 I
GRHL1 Taeniopygia guttata ENSTGUG00000013038 I
ENSTGUG00000014574 Taeniopygia guttata ENSTGUG00000014574 I
grhl2b Takifugu rubripes ENSTRUG00000002119 I
grhl1 Takifugu rubripes ENSTRUG00000013628 I
ENSTSYG00000004124 Tarsius syrichta ENSTSYG00000004124 I
grhl1 Tetraodon nigroviridis ENSTNIG00000017317 I
GRHL2 Tursiops truncatus ENSTTRG00000005794 I
Tal_R009556 Tyto alba Tal_R009556 I
Tal_R012680 Tyto alba Tal_R012680 I
GRHL1 Vicugna pacos ENSVPAG00000010842 I
grhl1.L Xenopus laevis XB-GENE-486580 I
grhl2 Xenopus tropicalis XB-GENE-485995 I
XP_002938935 Xenopus tropicalis XP_002938935 I
XP_002938936 Xenopus tropicalis XP_002938936 I
ENSXMAG00000013267 Xiphophorus maculatus ENSXMAG00000013267 I