SapurV1A.0767s0090 (Salix purpurea)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 SapurV1A.0767s0090 T181927_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.920 0.920
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.920 0.920
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.727 0.727
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0767s0090.1.p FAR1 73 160
SapurV1A.0767s0090.2.p FAR1 73 160
SapurV1A.0767s0090.3.p FAR1 73 160
SapurV1A.0767s0090.4.p FAR1 73 160
SapurV1A.0767s0090.5.p FAR1 73 160

Links

Other FAR1 family TFs
Other Salix purpurea TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00060270 Amborella trichopoda AMTR_s00025p00060270 N
Aquca_026_00063 Aquilegia coerulea Aquca_026_00063 N
fgenesh2_kg.6__3397__AT4G02990.1 Arabidopsis lyrata fgenesh2_kg.6__3397__AT4G02990.1 N
MTERF4 Arabidopsis thaliana AT4G02990 N
Bostr.2983s0143 Boechera stricta Bostr.2983s0143 N
Bo9g006180 Brassica oleracea Bo9g006180 N
Bra036228 Brassica rapa Bra036228 N
PK15839.1 Cannabis sativa PK15839.1 N
Cagra.2552s0028 Capsella grandiflora Cagra.2552s0028 N
Carubv10003638m.g Capsella rubella Carubv10003638m.g N
Ca_25867 Cicer arietinum Ca_25867 N
Cla005647 Citrullus lanatus Cla005647 N
Ciclev10019732m.g Citrus clementina Ciclev10019732m.g N
orange1.1g010066m.g Citrus sinensis orange1.1g010066m.g N
Cucsa.033690 Cucumis sativus Cucsa.033690 N
Eucgr.A01358 Eucalyptus grandis Eucgr.A01358 N
Thhalv10028570m.g Eutrema salsugineum Thhalv10028570m.g N
GLYMA02G38800 Glycine max GLYMA02G38800 N
Gorai.004G084100 Gossypium raimondii Gorai.004G084100 N
Lus10014877.g Linum usitatissimum Lus10014877.g N
cassava29542.valid.m1 Manihot esculenta cassava29542.valid.m1 N
MTR_5g068860 Medicago truncatula MTR_5g068860 N
mgf009605m Mimulus guttatus mgf009605m N
mgf007983m Mimulus guttatus mgf007983m N
POPTR_0014s13360 Populus trichocarpa POPTR_0014s13360 N
Pm019894 Prunus mume Pm019894 N
PRUPE_ppa004198mg Prunus persica PRUPE_ppa004198mg N
29703.m001536 Ricinus communis 29703.m001536 N
SapurV1A.0053s0470 Salix purpurea SapurV1A.0053s0470 N
Solyc04g005630.2 Solanum lycopersicum Solyc04g005630.2 N
PGSC0003DMG400002856 Solanum tuberosum PGSC0003DMG400002856 N
TCM_004475 Theobroma cacao TCM_004475 N
VIT_07s0104g00720 Vitis vinifera VIT_07s0104g00720 N