VDBG_00527 (Verticillium alfalfae)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 VDBG_00527 T195645_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sub-1
M01235_2.00 		Neurospora crassa
NVMGATCGRNN
NNYCGATCKBN		 PBM
Lambert et al.(2019)
pTH8614 		0.867 1.000
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEY14419 GATA 333 368

Links

Other GATA family TFs
Other Verticillium alfalfae TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_06506 Aegilops tauschii F775_06506 N 0.000
BRADI2G22130 Brachypodium distachyon BRADI2G22130 N 0.000
Ca_15677 Cicer arietinum Ca_15677 N 0.000
GLYMA02G40400 Glycine max GLYMA02G40400 N 0.000
MLOC_14005 Hordeum vulgare MLOC_14005 N 0.000
LPERR05G16310 Leersia perrieri LPERR05G16310 N 0.000
MTR_2g102450 Medicago truncatula MTR_2g102450 N 0.000
GSMUA_AchrUn_randomG18890_001 Musa acuminata GSMUA_AchrUn_randomG18890_001 N 0.000
OBART05G20480 Oryza barthii OBART05G20480 N 0.000
OB05G28010 Oryza brachyantha OB05G28010 N 0.000
ORGLA05G0178700 Oryza glaberrima ORGLA05G0178700 N 0.000
OGLUM05G21650 Oryza glumaepatula OGLUM05G21650 N 0.000
BGIOSGA017853 Oryza indica BGIOSGA017853 N 0.000
OMERI05G18410 Oryza meridionalis OMERI05G18410 N 0.000
ONIVA02G25740 Oryza nivara ONIVA02G25740 N 0.000
OPUNC05G18160 Oryza punctata OPUNC05G18160 N 0.000
ORUFI05G21790 Oryza rufipogon ORUFI05G21790 N 0.000
OS05G0481400 Oryza sativa OS05G0481400 N 0.000
Pavir.J04157 Panicum virgatum Pavir.J04157 N 0.000
Pavir.J00951 Panicum virgatum Pavir.J00951 N 0.000
Pm000222 Prunus mume Pm000222 N 0.000
Si022916m.g Setaria italica Si022916m.g N 0.000
Sb09g023630 Sorghum bicolor Sb09g023630 N 0.000
Traes_1AL_C340A8E74 Triticum aestivum Traes_1AL_C340A8E74 N 0.000
Traes_1BL_A8FC9D468 Triticum aestivum Traes_1BL_A8FC9D468 N 0.000
Traes_1DL_1806CFE5F1 Triticum aestivum Traes_1DL_1806CFE5F1 N 0.000
Traes_1DL_1806CFE5F Triticum aestivum Traes_1DL_1806CFE5F N 0.000
TRIUR3_13028 Triticum urartu TRIUR3_13028 N 0.000
VIT_06s0004g08270 Vitis vinifera VIT_06s0004g08270 N 0.000
GRMZM2G174610 Zea mays GRMZM2G174610 N 0.000