Gorai.003G062900 (Gossypium raimondii)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Gorai.003G062900 T196583_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.862 0.972
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.857 0.944
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.857 0.944
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.857 0.944
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.851 0.917
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.851 0.917
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.842 0.889
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.842 0.889
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.842 0.889
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.778
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G062900.1 GATA 196 231

Links

Other GATA family TFs
Other Gossypium raimondii TFs

614 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I
SRM1 Arabidopsis thaliana AT5G08520 D
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I
Bo9g174380 Brassica oleracea Bo9g174380 I
PK13672.1 Cannabis sativa PK13672.1 I
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I
Carubv10001525m.g Capsella rubella Carubv10001525m.g I
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I
Ca_19000 Cicer arietinum Ca_19000 I
Ca_14522 Cicer arietinum Ca_14522 N
Ca_05454 Cicer arietinum Ca_05454 I
Cla009230 Citrullus lanatus Cla009230 I
Cla020348 Citrullus lanatus Cla020348 I
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I
Cucsa.280970 Cucumis sativus Cucsa.280970 I
Cucsa.013870 Cucumis sativus Cucsa.013870 I
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N
GLYMA08G40020 Glycine max GLYMA08G40020 I
GLYMA10G42450 Glycine max GLYMA10G42450 I
GLYMA18G18140 Glycine max GLYMA18G18140 I
GLYMA07G28310 Glycine max GLYMA07G28310 I
GLYMA20G24600 Glycine max GLYMA20G24600 I
GLYMA20G01450 Glycine max GLYMA20G01450 I
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I
Lus10041001.g Linum usitatissimum Lus10041001.g N
Lus10013447.g Linum usitatissimum Lus10013447.g I
MDP0000289018 Malus domestica MDP0000289018 I
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I
MTR_1g111830 Medicago truncatula MTR_1g111830 I
mgf009460m Mimulus guttatus mgf009460m I
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I
OB04G36550 Oryza brachyantha OB04G36550 N
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N
Pm006046 Prunus mume Pm006046 I
Pm017050 Prunus mume Pm017050 I
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I
30131.m007263 Ricinus communis 30131.m007263 I
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I
Si022762m.g Setaria italica Si022762m.g N
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I
Sb06g032880 Sorghum bicolor Sb06g032880 N
TCM_007672 Theobroma cacao TCM_007672 I
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I
GRMZM2G149958 Zea mays GRMZM2G149958 I