Thhalv10021708m.g (Eutrema salsugineum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Thhalv10021708m.g T196835_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.867 1.000
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.867 1.000
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.825 0.943
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10021708m GATA 41 75
Thhalv10021738m GATA 30 64

Links

Other GATA family TFs
Other Eutrema salsugineum TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G49560 Brachypodium distachyon BRADI1G49560 I
BRADI1G49570 Brachypodium distachyon BRADI1G49570 I
BRADI4G35630 Brachypodium distachyon BRADI4G35630 I
LPERR06G01360 Leersia perrieri LPERR06G01360 N
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I
DREB1C Oryza indica BGIOSGA022219 N
OMERI06G01670 Oryza meridionalis OMERI06G01670 N
ONIVA06G01850 Oryza nivara ONIVA06G01850 N
OPUNC06G01430 Oryza punctata OPUNC06G01430 N
ORUFI06G01550 Oryza rufipogon ORUFI06G01550 N
DREB1C Oryza sativa OS06G0127100 N
Pavir.J35991 Panicum virgatum Pavir.J35991 N
Si007199m.g Setaria italica Si007199m.g N
Sb10g001620 Sorghum bicolor Sb10g001620 N
GRMZM2G069082 Zea mays GRMZM2G069082 I
GRMZM2G124037 Zea mays GRMZM2G124037 I
GRMZM2G380377 Zea mays GRMZM2G380377 N
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D